(5 nodes) RAVE complex network (Metarhizium acridum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MAC_02057	Uncharacterized protein. (315 aa)
	MAC_08746	WD repeat protein. (1026 aa)
	MAC_07750	Uncharacterized protein. (472 aa)
	MAC_04377	Uncharacterized protein. (362 aa)
	MAC_03119	SCF complex subunit Skp1; Belongs to the SKP1 family. (171 aa)

Your Current Organism:

Metarhizium acridum

NCBI taxonomy Id: 655827
Other names: M. acridum CQMa 102, Metarhizium acridum CQMa 102, Metarhizium anisopliae var. acridum CQMa 102

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAC_02057	MAC_03119	E9DWQ9	E9DZS1	Uncharacterized protein.	SCF complex subunit Skp1; Belongs to the SKP1 family.	0.415
MAC_02057	MAC_04377	E9DWQ9	E9E3C9	Uncharacterized protein.	Uncharacterized protein.	0.415
MAC_02057	MAC_07750	E9DWQ9	E9ED02	Uncharacterized protein.	Uncharacterized protein.	0.415
MAC_02057	MAC_08746	E9DWQ9	E9EFU8	Uncharacterized protein.	WD repeat protein.	0.944
MAC_03119	MAC_02057	E9DZS1	E9DWQ9	SCF complex subunit Skp1; Belongs to the SKP1 family.	Uncharacterized protein.	0.415
MAC_03119	MAC_08746	E9DZS1	E9EFU8	SCF complex subunit Skp1; Belongs to the SKP1 family.	WD repeat protein.	0.890
MAC_04377	MAC_02057	E9E3C9	E9DWQ9	Uncharacterized protein.	Uncharacterized protein.	0.415
MAC_04377	MAC_08746	E9E3C9	E9EFU8	Uncharacterized protein.	WD repeat protein.	0.611
MAC_07750	MAC_02057	E9ED02	E9DWQ9	Uncharacterized protein.	Uncharacterized protein.	0.415
MAC_07750	MAC_08746	E9ED02	E9EFU8	Uncharacterized protein.	WD repeat protein.	0.611
MAC_08746	MAC_02057	E9EFU8	E9DWQ9	WD repeat protein.	Uncharacterized protein.	0.944
MAC_08746	MAC_03119	E9EFU8	E9DZS1	WD repeat protein.	SCF complex subunit Skp1; Belongs to the SKP1 family.	0.890
MAC_08746	MAC_04377	E9EFU8	E9E3C9	WD repeat protein.	Uncharacterized protein.	0.611
MAC_08746	MAC_07750	E9EFU8	E9ED02	WD repeat protein.	Uncharacterized protein.	0.611