(17 nodes) Ubiquitin-like domain network (Metarhizium acridum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MAC_01946	Ubiquitin. (153 aa)
	MAC_00662	Rad60-SLD_2 domain-containing protein. (267 aa)
	MAC_00728	DNA damage-inducible protein 1. (415 aa)
	MAC_02642	Ubiquitin. (343 aa)
	MAC_03701	UV excision repair protein (RadW), putative. (400 aa)
	MAC_03766	Ubiquitin-like domain-containing protein. (423 aa)
	MAC_05281	NEDD8-like protein (RubA). (545 aa)
	MAC_05807	Conserved membrane protein, putative. (274 aa)
	MAC_06560	Tubulin specific chaperone cofactor B. (242 aa)
	MAC_07157	Ubiquitin-like modifier SUMO, putative. (98 aa)
	MAC_07485	Deubiquitination-protection protein dph1. (441 aa)
	MAC_07942	Ubiquitin carboxyl-terminal hydrolase. (564 aa)
	MAC_08633	Polyubiquitin. (245 aa)
	MAC_08658	Ubiquitin-like protein (HubA), putative. (207 aa)
	MAC_09093	Ubiquitin domain protein, putative. (293 aa)
	MAC_09572	Ubiquitin-like domain-containing protein. (202 aa)
	MAC_09597	Ubiquitin/metalloprotease fusion protein. (360 aa)

Your Current Organism:

Metarhizium acridum

NCBI taxonomy Id: 655827
Other names: M. acridum CQMa 102, Metarhizium acridum CQMa 102, Metarhizium anisopliae var. acridum CQMa 102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAC_00662	MAC_02642	E9DSR4	E9DYE5	Rad60-SLD_2 domain-containing protein.	Ubiquitin.	0.552
MAC_00662	MAC_08633	E9DSR4	E9EFI5	Rad60-SLD_2 domain-containing protein.	Polyubiquitin.	0.422
MAC_00728	MAC_01946	E9DSY0	E9DWE8	DNA damage-inducible protein 1.	Ubiquitin.	0.647
MAC_00728	MAC_02642	E9DSY0	E9DYE5	DNA damage-inducible protein 1.	Ubiquitin.	0.956
MAC_00728	MAC_03701	E9DSY0	E9E1F3	DNA damage-inducible protein 1.	UV excision repair protein (RadW), putative.	0.900
MAC_00728	MAC_05281	E9DSY0	E9E5Y3	DNA damage-inducible protein 1.	NEDD8-like protein (RubA).	0.415
MAC_00728	MAC_07485	E9DSY0	E9EC87	DNA damage-inducible protein 1.	Deubiquitination-protection protein dph1.	0.638
MAC_00728	MAC_08633	E9DSY0	E9EFI5	DNA damage-inducible protein 1.	Polyubiquitin.	0.741
MAC_00728	MAC_09572	E9DSY0	E9EI74	DNA damage-inducible protein 1.	Ubiquitin-like domain-containing protein.	0.645
MAC_01946	MAC_00728	E9DWE8	E9DSY0	Ubiquitin.	DNA damage-inducible protein 1.	0.647
MAC_01946	MAC_02642	E9DWE8	E9DYE5	Ubiquitin.	Ubiquitin.	0.984
MAC_01946	MAC_03701	E9DWE8	E9E1F3	Ubiquitin.	UV excision repair protein (RadW), putative.	0.796
MAC_01946	MAC_05281	E9DWE8	E9E5Y3	Ubiquitin.	NEDD8-like protein (RubA).	0.838
MAC_01946	MAC_07157	E9DWE8	E9EBA9	Ubiquitin.	Ubiquitin-like modifier SUMO, putative.	0.691
MAC_01946	MAC_07485	E9DWE8	E9EC87	Ubiquitin.	Deubiquitination-protection protein dph1.	0.596
MAC_01946	MAC_07942	E9DWE8	E9EDJ4	Ubiquitin.	Ubiquitin carboxyl-terminal hydrolase.	0.845
MAC_01946	MAC_08633	E9DWE8	E9EFI5	Ubiquitin.	Polyubiquitin.	0.996
MAC_01946	MAC_09572	E9DWE8	E9EI74	Ubiquitin.	Ubiquitin-like domain-containing protein.	0.622
MAC_02642	MAC_00662	E9DYE5	E9DSR4	Ubiquitin.	Rad60-SLD_2 domain-containing protein.	0.552
MAC_02642	MAC_00728	E9DYE5	E9DSY0	Ubiquitin.	DNA damage-inducible protein 1.	0.956