6 items (Grosmannia clavigera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_3508	Hexaprenyl pyrophosphate synthetase. (556 aa)
	CMQ_1246	Alkyl transferase; Belongs to the UPP synthase family. (354 aa)
	CMQ_1012	Farnesyltransferase alpha subunit ram2. (552 aa)
	CMQ_877	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. (328 aa)
	CMQ_2676	Di-cis-decaprenylcistransferase. (352 aa)
	CMQ_2722	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (502 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1012	CMQ_1246	F0XEC1	F0XD43	Farnesyltransferase alpha subunit ram2.	Alkyl transferase; Belongs to the UPP synthase family.	0.870
CMQ_1012	CMQ_2676	F0XEC1	F0XHC4	Farnesyltransferase alpha subunit ram2.	Di-cis-decaprenylcistransferase.	0.835
CMQ_1012	CMQ_2722	F0XEC1	F0XHM5	Farnesyltransferase alpha subunit ram2.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.999
CMQ_1012	CMQ_3508	F0XEC1	F0X8Z5	Farnesyltransferase alpha subunit ram2.	Hexaprenyl pyrophosphate synthetase.	0.825
CMQ_1012	CMQ_877	F0XEC1	F0XER3	Farnesyltransferase alpha subunit ram2.	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.864
CMQ_1246	CMQ_1012	F0XD43	F0XEC1	Alkyl transferase; Belongs to the UPP synthase family.	Farnesyltransferase alpha subunit ram2.	0.870
CMQ_1246	CMQ_2676	F0XD43	F0XHC4	Alkyl transferase; Belongs to the UPP synthase family.	Di-cis-decaprenylcistransferase.	0.998
CMQ_1246	CMQ_2722	F0XD43	F0XHM5	Alkyl transferase; Belongs to the UPP synthase family.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.868
CMQ_1246	CMQ_3508	F0XD43	F0X8Z5	Alkyl transferase; Belongs to the UPP synthase family.	Hexaprenyl pyrophosphate synthetase.	0.852
CMQ_1246	CMQ_877	F0XD43	F0XER3	Alkyl transferase; Belongs to the UPP synthase family.	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.849
CMQ_2676	CMQ_1012	F0XHC4	F0XEC1	Di-cis-decaprenylcistransferase.	Farnesyltransferase alpha subunit ram2.	0.835
CMQ_2676	CMQ_1246	F0XHC4	F0XD43	Di-cis-decaprenylcistransferase.	Alkyl transferase; Belongs to the UPP synthase family.	0.998
CMQ_2676	CMQ_2722	F0XHC4	F0XHM5	Di-cis-decaprenylcistransferase.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.833
CMQ_2676	CMQ_3508	F0XHC4	F0X8Z5	Di-cis-decaprenylcistransferase.	Hexaprenyl pyrophosphate synthetase.	0.825
CMQ_2676	CMQ_877	F0XHC4	F0XER3	Di-cis-decaprenylcistransferase.	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.825
CMQ_2722	CMQ_1012	F0XHM5	F0XEC1	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Farnesyltransferase alpha subunit ram2.	0.999
CMQ_2722	CMQ_1246	F0XHM5	F0XD43	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Alkyl transferase; Belongs to the UPP synthase family.	0.868
CMQ_2722	CMQ_2676	F0XHM5	F0XHC4	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Di-cis-decaprenylcistransferase.	0.833
CMQ_2722	CMQ_3508	F0XHM5	F0X8Z5	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Hexaprenyl pyrophosphate synthetase.	0.874
CMQ_2722	CMQ_877	F0XHM5	F0XER3	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.874