(24 nodes) Cytosolic ribosome network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_6964	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (204 aa)
	CMQ_6984	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (97 aa)
	CMQ_6890	40S ribosomal protein s5; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	CMQ_6557	40S ribosomal protein s10b. (165 aa)
	CMQ_3500	40S ribosomal protein s17. (148 aa)
	CMQ_3824	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	CMQ_5325	40S ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	CMQ_5335	60S ribosomal protein. (160 aa)
	CMQ_1305	60S ribosomal protein l8. (263 aa)
	CMQ_491	60S ribosomal protein l5. (301 aa)
	CMQ_1675	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (200 aa)
	CMQ_5431	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (118 aa)
	CMQ_3096	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (104 aa)
	CMQ_2737	60S ribosomal protein l2. (254 aa)
	CMQ_6116	60S ribosomal protein. (356 aa)
	CMQ_6301	60S ribosomal protein l17; Belongs to the universal ribosomal protein uL22 family. (185 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (450 aa)
	CMQ_7277	40S ribosomal protein s18; Belongs to the universal ribosomal protein uS13 family. (156 aa)
	CMQ_7652	60S ribosomal protein l28. (152 aa)
	CMQ_177	40S ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	CMQ_8	60S ribosomal protein l7. (275 aa)
	CMQ_5705	60S ribosomal protein l18. (185 aa)
	CMQ_5621	60S ribosomal protein l31. (119 aa)
	CMQ_4812	40S ribosomal protein s22; Belongs to the universal ribosomal protein uS8 family. (130 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1305	CMQ_1675	F0XBY2	F0XDN5	60S ribosomal protein l8.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
CMQ_1305	CMQ_177	F0XBY2	F0XR11	60S ribosomal protein l8.	40S ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family.	0.999
CMQ_1305	CMQ_2737	F0XBY2	F0XHM2	60S ribosomal protein l8.	60S ribosomal protein l2.	0.999
CMQ_1305	CMQ_3096	F0XBY2	F0XHC9	60S ribosomal protein l8.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
CMQ_1305	CMQ_3500	F0XBY2	F0X8K3	60S ribosomal protein l8.	40S ribosomal protein s17.	0.999
CMQ_1305	CMQ_3824	F0XBY2	F0XAG1	60S ribosomal protein l8.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
CMQ_1305	CMQ_4812	F0XBY2	F0XUD5	60S ribosomal protein l8.	40S ribosomal protein s22; Belongs to the universal ribosomal protein uS8 family.	0.999
CMQ_1305	CMQ_491	F0XBY2	F0XC11	60S ribosomal protein l8.	60S ribosomal protein l5.	0.999
CMQ_1305	CMQ_5325	F0XBY2	F0XBM7	60S ribosomal protein l8.	40S ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.	0.999
CMQ_1305	CMQ_5335	F0XBY2	F0XBM8	60S ribosomal protein l8.	60S ribosomal protein.	0.999
CMQ_1305	CMQ_5431	F0XBY2	F0XG44	60S ribosomal protein l8.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
CMQ_1305	CMQ_5621	F0XBY2	F0XT38	60S ribosomal protein l8.	60S ribosomal protein l31.	0.999
CMQ_1305	CMQ_5705	F0XBY2	F0XSH7	60S ribosomal protein l8.	60S ribosomal protein l18.	0.999
CMQ_1305	CMQ_6116	F0XBY2	F0XLX9	60S ribosomal protein l8.	60S ribosomal protein.	0.999
CMQ_1305	CMQ_6301	F0XBY2	F0XM07	60S ribosomal protein l8.	60S ribosomal protein l17; Belongs to the universal ribosomal protein uL22 family.	0.999
CMQ_1305	CMQ_6557	F0XBY2	F0X7Y6	60S ribosomal protein l8.	40S ribosomal protein s10b.	0.999
CMQ_1305	CMQ_6890	F0XBY2	F0X7C8	60S ribosomal protein l8.	40S ribosomal protein s5; Belongs to the universal ribosomal protein uS7 family.	0.999
CMQ_1305	CMQ_6964	F0XBY2	F0X6J9	60S ribosomal protein l8.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
CMQ_1305	CMQ_6984	F0XBY2	F0X7C7	60S ribosomal protein l8.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
CMQ_1305	CMQ_7277	F0XBY2	F0XPL3	60S ribosomal protein l8.	40S ribosomal protein s18; Belongs to the universal ribosomal protein uS13 family.	0.999