(20 nodes) Regulation of cell morphogenesis network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_6861	Serine/threonine-protein phosphatase. (482 aa)
	CMQ_6652	Ras family GTP-binding protein rho1p. (537 aa)
	CMQ_6971	Arp2 3 complex subunit. (239 aa)
	CMQ_3832	Uncharacterized protein. (90 aa)
	CMQ_4148	Conidiophore development protein hyma. (587 aa)
	CMQ_5133	Uncharacterized protein. (1043 aa)
	CMQ_1359	Myosin 1 myo5; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1234 aa)
	CMQ_1539	Uncharacterized protein. (525 aa)
	CMQ_1161	Rho-like protein. (195 aa)
	CMQ_910	Uncharacterized protein. (846 aa)
	CMQ_3156	Rho-like GTPase cdc42. (194 aa)
	CMQ_2161	Protein rho3. (208 aa)
	CMQ_2450	Cell polarity protein. (1582 aa)
	CMQ_8255	Rho GTPase rho. (201 aa)
	CMQ_7507	Sh3 domain protein. (1067 aa)
	CMQ_104	Cellular morphogenesis protein. (1451 aa)
	CMQ_7906	Histone acetylase complex subunit mrg15-2. (307 aa)
	CMQ_5502	Cell polarity protein. (924 aa)
	CMQ_4341	Rho GTPase rho1. (196 aa)
	CMQ_6540	Rho GTPase. (296 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_104	CMQ_1161	F0XR46	F0XDE2	Cellular morphogenesis protein.	Rho-like protein.	0.578
CMQ_104	CMQ_2161	F0XR46	F0XJ87	Cellular morphogenesis protein.	Protein rho3.	0.578
CMQ_104	CMQ_3156	F0XR46	F0XH02	Cellular morphogenesis protein.	Rho-like GTPase cdc42.	0.628
CMQ_104	CMQ_4341	F0XR46	F0XTM5	Cellular morphogenesis protein.	Rho GTPase rho1.	0.569
CMQ_104	CMQ_6540	F0XR46	F0X6Q5	Cellular morphogenesis protein.	Rho GTPase.	0.596
CMQ_104	CMQ_6652	F0XR46	F0X6Z3	Cellular morphogenesis protein.	Ras family GTP-binding protein rho1p.	0.569
CMQ_104	CMQ_8255	F0XR46	F0XL44	Cellular morphogenesis protein.	Rho GTPase rho.	0.605
CMQ_1161	CMQ_104	F0XDE2	F0XR46	Rho-like protein.	Cellular morphogenesis protein.	0.578
CMQ_1161	CMQ_1539	F0XDE2	F0XDD7	Rho-like protein.	Uncharacterized protein.	0.549
CMQ_1161	CMQ_3156	F0XDE2	F0XH02	Rho-like protein.	Rho-like GTPase cdc42.	0.728
CMQ_1161	CMQ_3832	F0XDE2	F0X9X9	Rho-like protein.	Uncharacterized protein.	0.549
CMQ_1161	CMQ_4341	F0XDE2	F0XTM5	Rho-like protein.	Rho GTPase rho1.	0.844
CMQ_1161	CMQ_6540	F0XDE2	F0X6Q5	Rho-like protein.	Rho GTPase.	0.856
CMQ_1161	CMQ_6652	F0XDE2	F0X6Z3	Rho-like protein.	Ras family GTP-binding protein rho1p.	0.633
CMQ_1161	CMQ_6861	F0XDE2	F0X6S8	Rho-like protein.	Serine/threonine-protein phosphatase.	0.418
CMQ_1161	CMQ_6971	F0XDE2	F0X773	Rho-like protein.	Arp2 3 complex subunit.	0.590
CMQ_1359	CMQ_6971	F0XCH9	F0X773	Myosin 1 myo5; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Arp2 3 complex subunit.	0.474
CMQ_1539	CMQ_1161	F0XDD7	F0XDE2	Uncharacterized protein.	Rho-like protein.	0.549
CMQ_1539	CMQ_2161	F0XDD7	F0XJ87	Uncharacterized protein.	Protein rho3.	0.549
CMQ_1539	CMQ_3156	F0XDD7	F0XH02	Uncharacterized protein.	Rho-like GTPase cdc42.	0.549