STRINGSTRING
CMQ_7206 CMQ_7206 CMQ_985 CMQ_985 CMQ_469 CMQ_469 CMQ_665 CMQ_665 CMQ_1208 CMQ_1208 CMQ_1596 CMQ_1596 CMQ_1671 CMQ_1671 CMQ_758 CMQ_758 CMQ_722 CMQ_722 CMQ_1341 CMQ_1341 CMQ_660 CMQ_660 CMQ_1101 CMQ_1101 CMQ_598 CMQ_598 CMQ_1336 CMQ_1336 CMQ_1331 CMQ_1331 CMQ_1687 CMQ_1687 CMQ_1192 CMQ_1192 PAN2 PAN2 CMQ_5360 CMQ_5360 CMQ_5321 CMQ_5321 CMQ_1766 CMQ_1766 CMQ_1811 CMQ_1811 CMQ_8304 CMQ_8304 CMQ_8283 CMQ_8283 CMQ_6165 CMQ_6165 CMQ_6114 CMQ_6114 CMQ_6496 CMQ_6496 CMQ_6341 CMQ_6341 CMQ_6424 CMQ_6424 CMQ_6028 CMQ_6028 CMQ_6092 CMQ_6092 CMQ_1998 CMQ_1998 CMQ_1862 CMQ_1862 CMQ_2030 CMQ_2030 CMQ_2025 CMQ_2025 CMQ_1910 CMQ_1910 CMQ_7233 CMQ_7233 CMQ_7092 CMQ_7092 CMQ_1138 CMQ_1138 CMQ_7123 CMQ_7123 CMQ_7332 CMQ_7332 CMQ_7552 CMQ_7552 CMQ_7039 CMQ_7039 CMQ_7104 CMQ_7104 CMQ_7573 CMQ_7573 CMQ_7166 CMQ_7166 CMQ_7336 CMQ_7336 CMQ_338 CMQ_338 CMQ_7873 CMQ_7873 CMQ_7979 CMQ_7979 CMQ_7916 CMQ_7916 CMQ_5726 CMQ_5726 CMQ_5805 CMQ_5805 CMQ_5589 CMQ_5589 CMQ_5735 CMQ_5735 CMQ_5582 CMQ_5582 CMQ_5558 CMQ_5558 CMQ_5524 CMQ_5524 CMQ_4461 CMQ_4461 CMQ_4603 CMQ_4603 CMQ_4826 CMQ_4826 CMQ_4489 CMQ_4489 LSM1 LSM1 CMQ_4757 CMQ_4757 CMQ_4547 CMQ_4547 CMQ_4896 CMQ_4896 CMQ_4273 CMQ_4273 CMQ_4499 CMQ_4499 CMQ_4484 CMQ_4484 CMQ_4699 CMQ_4699 CMQ_6575 CMQ_6575 CMQ_6656 CMQ_6656 CMQ_8114 CMQ_8114 CMQ_4984 CMQ_4984 CMQ_4933 CMQ_4933 CMQ_4960 CMQ_4960 CMQ_2277 CMQ_2277 CMQ_2270 CMQ_2270 CMQ_2468 CMQ_2468 CMQ_5864 CMQ_5864 CMQ_5834 CMQ_5834 CMQ_2709 CMQ_2709 CMQ_2838 CMQ_2838 CMQ_2672 CMQ_2672 CMQ_3075 CMQ_3075 CMQ_2702 CMQ_2702 CMQ_2824 CMQ_2824 CMQ_2560 CMQ_2560 CMQ_2867 CMQ_2867 CMQ_2940 CMQ_2940 CMQ_2796 CMQ_2796 CMQ_3039 CMQ_3039 CMQ_2933 CMQ_2933 CMQ_2789 CMQ_2789 CMQ_2647 CMQ_2647 CMQ_2696 CMQ_2696 FEN1 FEN1 CMQ_1404 CMQ_1404 CMQ_648 CMQ_648 CMQ_1523 CMQ_1523 CMQ_507 CMQ_507 CMQ_1444 CMQ_1444 LSM5 LSM5 CMQ_363 CMQ_363 CMQ_1075 CMQ_1075 CMQ_3945 CMQ_3945 CMQ_3409 CMQ_3409 CMQ_3512 CMQ_3512 CMQ_3580 CMQ_3580 CMQ_3627 CMQ_3627 CMQ_3551 CMQ_3551 CMQ_3665 CMQ_3665 CMQ_3887 CMQ_3887 CMQ_4029 CMQ_4029 CMQ_3320 CMQ_3320 CMQ_6929 CMQ_6929 CMQ_6791 CMQ_6791 CMQ_6723 CMQ_6723 CMQ_6758 CMQ_6758 CMQ_6566 CMQ_6566 CMQ_6548 CMQ_6548 CMQ_6530 CMQ_6530 CMQ_6676 CMQ_6676
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CMQ_7206Transcriptional effector. (693 aa)
CMQ_985Ccch zinc finger DNA-binding protein. (410 aa)
CMQ_469Uncharacterized protein. (399 aa)
CMQ_665Nuclease s1. (339 aa)
CMQ_1208Inosine-uridine preferring nucleoside hydrolase. (455 aa)
CMQ_1596RNA polymerase 2 subunit 7. (144 aa)
CMQ_1671Nudix domain containing protein. (153 aa)
CMQ_758Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (304 aa)
CMQ_722Red-like protein. (574 aa)
CMQ_1341Uridine nucleosidase. (382 aa)
CMQ_660RNA-binding protein. (201 aa)
CMQ_1101Exosome complex exonuclease rrp41. (511 aa)
CMQ_598Arginine methyltransferase-interacting ring finger protein. (482 aa)
CMQ_1336Uncharacterized protein. (293 aa)
CMQ_1331Ccr4-not transcription complex subunit. (2195 aa)
CMQ_1687DNA directed RNA polymerase 2 polypeptide d. (143 aa)
CMQ_1192Exosome subunit rrp45. (294 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1223 aa)
CMQ_5360Uncharacterized protein. (609 aa)
CMQ_5321Small nuclear ribonucleoprotein. (107 aa)
CMQ_1766Dead deah box RNA helicase. (1326 aa)
CMQ_1811Uncharacterized protein. (564 aa)
CMQ_8304Exosome complex exonuclease exoribonuclease; Belongs to the RNR ribonuclease family. (1030 aa)
CMQ_8283DNA repair protein. (614 aa)
CMQ_6165Translation elongation factor ef-1. (796 aa)
CMQ_6114Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (236 aa)
CMQ_6496Uncharacterized protein. (540 aa)
CMQ_6341Cecr1 family adenosine deaminase. (639 aa)
CMQ_6424Uncharacterized protein. (433 aa)
CMQ_6028Nudix domain containing protein; Belongs to the Nudix hydrolase family. (269 aa)
CMQ_6092Ccr4-not core complex subunit. (1737 aa)
CMQ_1998Uncharacterized protein. (119 aa)
CMQ_1862Endoplasmic reticulum and nuclear membrane proteinc. (649 aa)
CMQ_2030Exosome complex exonuclease. (1631 aa)
CMQ_2025Antiviral protein. (1470 aa)
CMQ_1910Rnp domain containing protein. (363 aa)
CMQ_7233Uncharacterized protein. (216 aa)
CMQ_7092Eukaryotic peptide chain release factor GTP-binding subunit. (728 aa)
CMQ_1138Ccr4-not transcription subunit 3. (755 aa)
CMQ_7123Decapping enzyme. (290 aa)
CMQ_7332Topoisomerase family protein. (816 aa)
CMQ_7552Uncharacterized protein. (253 aa)
CMQ_7039Phosphoprotein phosphatase. (677 aa)
CMQ_7104RNA-binding protein. (1284 aa)
CMQ_7573Meiosis protein. (633 aa)
CMQ_7166Endonuclease. (346 aa)
CMQ_7336Cyclic-AMP phosphodiesterase. (614 aa)
CMQ_338Cap-binding protein. (868 aa)
CMQ_7873Cell wall biogenesis protein phosphatase. (1428 aa)
CMQ_7979Caf1 family ribonuclease. (361 aa)
CMQ_7916Cap-binding protein; Belongs to the eukaryotic initiation factor 4E family. (247 aa)
CMQ_5726Ccr4-not core complex subunit. (434 aa)
CMQ_5805Exosome complex exonuclease. (576 aa)
CMQ_5589Ribonuclease h. (113 aa)
CMQ_5735Cecr1 family adenosine deaminase. (588 aa)
CMQ_5582Exosome-associated family protein. (181 aa)
CMQ_55583 exoribonuclease family protein. (389 aa)
CMQ_5524Serine/threonine-protein phosphatase family. (614 aa)
CMQ_4461Ubiquitin fusion degradation protein. (380 aa)
CMQ_4603Pumilio-family RNA-binding repeat protein. (862 aa)
CMQ_4826Nucleolar rnase. (372 aa)
CMQ_4489Ribonuclease. (974 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (182 aa)
CMQ_47573 exoribonuclease family protein. (644 aa)
CMQ_4547Pumilio family mRNA-binding protein. (953 aa)
CMQ_4896Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (596 aa)
CMQ_4273Uncharacterized protein. (235 aa)
CMQ_4499Decapping enzyme. (858 aa)
CMQ_4484Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1. (488 aa)
CMQ_4699Yt521-b-like splicing factor. (521 aa)
CMQ_6575RNA lariat debranching protein. (551 aa)
CMQ_6656Nucleoside hydrolase. (380 aa)
CMQ_8114Exosome complex exonuclease. (273 aa)
CMQ_4984Uncharacterized protein. (217 aa)
CMQ_4933Transcription factor. (888 aa)
CMQ_4960C3H1-type domain-containing protein. (1216 aa)
CMQ_2277EST1_DNA_bind domain-containing protein. (653 aa)
CMQ_2270Nuclease s1. (303 aa)
CMQ_2468RNA helicase; Belongs to the DEAD box helicase family. (537 aa)
CMQ_5864HD family protein. (215 aa)
CMQ_5834Deoxyuridine 5-triphosphate nucleotidohydrolase. (216 aa)
CMQ_2709Sec2p domain-containing protein. (413 aa)
CMQ_2838Exosome complex subunit. (229 aa)
CMQ_2672Pyrimidine nucleotidase. (241 aa)
CMQ_3075Uncharacterized protein. (965 aa)
CMQ_2702Bar domain containing protein. (1158 aa)
CMQ_2824Mitochondrial ATP-dependent RNA helicase. (780 aa)
CMQ_2560Bis(5'-adenosyl)-triphosphatase. (215 aa)
CMQ_2867Ribonuclease p complex subunit. (827 aa)
CMQ_2940Yjef n-terminal domain containing protein. (781 aa)
CMQ_2796Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (181 aa)
CMQ_3039Exosome complex subunit. (246 aa)
CMQ_2933Nuclear cap-binding protein subunit 2. (218 aa)
CMQ_2789Adenosine deaminase family protein. (457 aa)
CMQ_2647Rpp14 protein family. (206 aa)
CMQ_26965'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1463 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (856 aa)
CMQ_1404Regulator of nonsense. (1095 aa)
CMQ_648Cid13-like poly(A) RNA polymerase. (1101 aa)
CMQ_1523Nucleoside diphosphatase; Belongs to the GDA1/CD39 NTPase family. (921 aa)
CMQ_507Inosine-uridine nucleoside n-ribohydrolase. (362 aa)
CMQ_1444Uncharacterized protein. (461 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
CMQ_363DNA polymerase delta subunit. (532 aa)
CMQ_1075Inosine-uridine preferring nucleoside hydrolase. (144 aa)
CMQ_3945Uncharacterized protein. (425 aa)
CMQ_3409Deoxyribonuclease. (412 aa)
CMQ_3512Smr domain containing protein. (402 aa)
CMQ_3580Cell differentiation protein. (275 aa)
CMQ_3627Nucleoside diphosphatase gda1; Belongs to the GDA1/CD39 NTPase family. (551 aa)
CMQ_3551Nonsense-mediated mRNA decay factor. (1178 aa)
CMQ_3665Thermotolerance protein. (1382 aa)
CMQ_3887Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (414 aa)
CMQ_40293-hydroxyisobutyrate dehydrogenase. (338 aa)
CMQ_3320Topisomerase 2 associated protein. (837 aa)
CMQ_6929Meiotic recombination protein ski8. (525 aa)
CMQ_6791Alpha-mannosyltransferase. (865 aa)
CMQ_6723Uncharacterized protein. (1641 aa)
CMQ_675826S protease regulatory subunit 8; Belongs to the AAA ATPase family. (389 aa)
CMQ_6566Histone H2A; Belongs to the histone H2A family. (142 aa)
CMQ_6548R3h domain protein. (662 aa)
CMQ_6530ATP-dependent RNA helicase dob1. (1133 aa)
CMQ_6676Nonsense-mediated mRNA decay protein. (808 aa)
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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