(14 nodes) Telomeric DNA binding network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_4653	DNA repair protein rad50. (1301 aa)
	CMQ_6626	Myb DNA-binding protein. (834 aa)
	CMQ_3289	Dsb repair complex subunit. (685 aa)
	CMQ_3837	Uncharacterized protein. (951 aa)
	CMQ_1811	Uncharacterized protein. (564 aa)
	CMQ_546	Telomere_reg-2 domain-containing protein. (1006 aa)
	CMQ_728	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (631 aa)
	CMQ_2840	Recombination hotspot-binding protein. (281 aa)
	CMQ_3100	Rnp domain containing protein. (351 aa)
	CMQ_2555	Uncharacterized protein. (976 aa)
	CMQ_2277	EST1_DNA_bind domain-containing protein. (653 aa)
	CMQ_8096	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1100 aa)
	CMQ_5934	Telomere-binding alpha subunit central domain containing protein. (716 aa)
	CMQ_7482	Ku family DNA-binding protein. (734 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_2555	CMQ_3100	F0XHM4	F0XGP2	Uncharacterized protein.	Rnp domain containing protein.	0.413
CMQ_2555	CMQ_3289	F0XHM4	F0XAB8	Uncharacterized protein.	Dsb repair complex subunit.	0.755
CMQ_2555	CMQ_3837	F0XHM4	F0XAB9	Uncharacterized protein.	Uncharacterized protein.	0.671
CMQ_2555	CMQ_7482	F0XHM4	F0XQ43	Uncharacterized protein.	Ku family DNA-binding protein.	0.778
CMQ_2555	CMQ_8096	F0XHM4	F0XKQ7	Uncharacterized protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.953
CMQ_3100	CMQ_2555	F0XGP2	F0XHM4	Rnp domain containing protein.	Uncharacterized protein.	0.413
CMQ_3100	CMQ_728	F0XGP2	F0XFA7	Rnp domain containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.410
CMQ_3100	CMQ_8096	F0XGP2	F0XKQ7	Rnp domain containing protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.583
CMQ_3289	CMQ_2555	F0XAB8	F0XHM4	Dsb repair complex subunit.	Uncharacterized protein.	0.755
CMQ_3289	CMQ_4653	F0XAB8	F0XU67	Dsb repair complex subunit.	DNA repair protein rad50.	0.919
CMQ_3289	CMQ_5934	F0XAB8	F0XLN0	Dsb repair complex subunit.	Telomere-binding alpha subunit central domain containing protein.	0.420
CMQ_3289	CMQ_728	F0XAB8	F0XFA7	Dsb repair complex subunit.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.779
CMQ_3289	CMQ_7482	F0XAB8	F0XQ43	Dsb repair complex subunit.	Ku family DNA-binding protein.	0.999
CMQ_3289	CMQ_8096	F0XAB8	F0XKQ7	Dsb repair complex subunit.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.836
CMQ_3837	CMQ_2555	F0XAB9	F0XHM4	Uncharacterized protein.	Uncharacterized protein.	0.671
CMQ_3837	CMQ_4653	F0XAB9	F0XU67	Uncharacterized protein.	DNA repair protein rad50.	0.890
CMQ_3837	CMQ_5934	F0XAB9	F0XLN0	Uncharacterized protein.	Telomere-binding alpha subunit central domain containing protein.	0.420
CMQ_3837	CMQ_728	F0XAB9	F0XFA7	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.746
CMQ_3837	CMQ_7482	F0XAB9	F0XQ43	Uncharacterized protein.	Ku family DNA-binding protein.	0.982
CMQ_3837	CMQ_8096	F0XAB9	F0XKQ7	Uncharacterized protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.773