6 items (Grosmannia clavigera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_4273	Uncharacterized protein. (235 aa)
	CMQ_4499	Decapping enzyme. (858 aa)
	CMQ_338	Cap-binding protein. (868 aa)
	CMQ_7123	Decapping enzyme. (290 aa)
	CMQ_2933	Nuclear cap-binding protein subunit 2. (218 aa)
	CMQ_3303	C3hc zinc finger protein. (586 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_2933	CMQ_338	F0XGY1	F0XRE3	Nuclear cap-binding protein subunit 2.	Cap-binding protein.	0.999
CMQ_2933	CMQ_7123	F0XGY1	F0XP16	Nuclear cap-binding protein subunit 2.	Decapping enzyme.	0.589
CMQ_338	CMQ_2933	F0XRE3	F0XGY1	Cap-binding protein.	Nuclear cap-binding protein subunit 2.	0.999
CMQ_338	CMQ_7123	F0XRE3	F0XP16	Cap-binding protein.	Decapping enzyme.	0.573
CMQ_4273	CMQ_7123	F0XUQ0	F0XP16	Uncharacterized protein.	Decapping enzyme.	0.974
CMQ_4499	CMQ_7123	F0XUQ4	F0XP16	Decapping enzyme.	Decapping enzyme.	0.974
CMQ_7123	CMQ_2933	F0XP16	F0XGY1	Decapping enzyme.	Nuclear cap-binding protein subunit 2.	0.589
CMQ_7123	CMQ_338	F0XP16	F0XRE3	Decapping enzyme.	Cap-binding protein.	0.573
CMQ_7123	CMQ_4273	F0XP16	F0XUQ0	Decapping enzyme.	Uncharacterized protein.	0.974
CMQ_7123	CMQ_4499	F0XP16	F0XUQ4	Decapping enzyme.	Decapping enzyme.	0.974