(16 nodes) Longin-like domain superfamily network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_1130	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (529 aa)
	CMQ_6716	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (198 aa)
	CMQ_1206	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (225 aa)
	CMQ_3176	Trafficking protein particle complex subunit 2. (182 aa)
	CMQ_769	Ap-1 complex subunit theta-1. (214 aa)
	CMQ_1027	Protein transport protein sec22; Belongs to the synaptobrevin family. (429 aa)
	CMQ_1038	Snare protein; Belongs to the synaptobrevin family. (198 aa)
	CMQ_1269	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (197 aa)
	CMQ_589	Vacuolar protein-sorting protein bro1. (1078 aa)
	CMQ_2544	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (190 aa)
	CMQ_2974	Synaptobrevin-like protein; Belongs to the synaptobrevin family. (240 aa)
	CMQ_5075	Signal sequence receptor alpha. (669 aa)
	CMQ_7498	Ap-1 adaptor complex subunit; Belongs to the adaptor complexes medium subunit family. (448 aa)
	CMQ_7414	Ap-2 adaptor complex subunit; Belongs to the adaptor complexes medium subunit family. (437 aa)
	CMQ_5537	Sedlin. (223 aa)
	CMQ_5706	Ap-3 adaptor complex subunit; Belongs to the adaptor complexes medium subunit family. (609 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1027	CMQ_1038	F0XFT4	F0XEQ5	Protein transport protein sec22; Belongs to the synaptobrevin family.	Snare protein; Belongs to the synaptobrevin family.	0.995
CMQ_1027	CMQ_1130	F0XFT4	F0XCQ8	Protein transport protein sec22; Belongs to the synaptobrevin family.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.843
CMQ_1027	CMQ_1206	F0XFT4	F0XC90	Protein transport protein sec22; Belongs to the synaptobrevin family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.663
CMQ_1027	CMQ_1269	F0XFT4	F0XEB4	Protein transport protein sec22; Belongs to the synaptobrevin family.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.831
CMQ_1027	CMQ_2544	F0XFT4	F0XH17	Protein transport protein sec22; Belongs to the synaptobrevin family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.763
CMQ_1027	CMQ_2974	F0XFT4	F0XHV4	Protein transport protein sec22; Belongs to the synaptobrevin family.	Synaptobrevin-like protein; Belongs to the synaptobrevin family.	0.560
CMQ_1027	CMQ_3176	F0XFT4	F0XGY3	Protein transport protein sec22; Belongs to the synaptobrevin family.	Trafficking protein particle complex subunit 2.	0.711
CMQ_1027	CMQ_5537	F0XFT4	F0XSJ5	Protein transport protein sec22; Belongs to the synaptobrevin family.	Sedlin.	0.615
CMQ_1038	CMQ_1027	F0XEQ5	F0XFT4	Snare protein; Belongs to the synaptobrevin family.	Protein transport protein sec22; Belongs to the synaptobrevin family.	0.995
CMQ_1038	CMQ_1130	F0XEQ5	F0XCQ8	Snare protein; Belongs to the synaptobrevin family.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.752
CMQ_1038	CMQ_1206	F0XEQ5	F0XC90	Snare protein; Belongs to the synaptobrevin family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.631
CMQ_1038	CMQ_1269	F0XEQ5	F0XEB4	Snare protein; Belongs to the synaptobrevin family.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.693
CMQ_1038	CMQ_2544	F0XEQ5	F0XH17	Snare protein; Belongs to the synaptobrevin family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.674
CMQ_1038	CMQ_2974	F0XEQ5	F0XHV4	Snare protein; Belongs to the synaptobrevin family.	Synaptobrevin-like protein; Belongs to the synaptobrevin family.	0.593
CMQ_1038	CMQ_3176	F0XEQ5	F0XGY3	Snare protein; Belongs to the synaptobrevin family.	Trafficking protein particle complex subunit 2.	0.788
CMQ_1130	CMQ_1027	F0XCQ8	F0XFT4	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Protein transport protein sec22; Belongs to the synaptobrevin family.	0.843
CMQ_1130	CMQ_1038	F0XCQ8	F0XEQ5	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Snare protein; Belongs to the synaptobrevin family.	0.752
CMQ_1130	CMQ_1269	F0XCQ8	F0XEB4	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.999
CMQ_1206	CMQ_1027	F0XC90	F0XFT4	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Protein transport protein sec22; Belongs to the synaptobrevin family.	0.663
CMQ_1206	CMQ_1038	F0XC90	F0XEQ5	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Snare protein; Belongs to the synaptobrevin family.	0.631