(19 nodes) Recognition of DNA damage by PCNA-containing replication complex network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_4277	WD repeat protein. (1031 aa)
	CMQ_4322	Udp-galactopyranose mutase. (512 aa)
	CMQ_8018	Ubiquitin c-terminal hydrolase; Belongs to the peptidase C19 family. (800 aa)
	CMQ_135	Hmg-i/hmg-y, DNA-binding protein. (1274 aa)
	CMQ_7360	Ubiquitin ligase subunit. (122 aa)
	CMQ_2876	Cbf nf-y family transcription factor. (268 aa)
	CMQ_2773	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	CMQ_5418	Ubiquitin. (97 aa)
	CMQ_728	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (631 aa)
	CMQ_740	DNA repair protein. (451 aa)
	CMQ_1444	Uncharacterized protein. (461 aa)
	CMQ_965	DNA replication factor a subunit ssb3. (107 aa)
	CMQ_863	Uncharacterized protein. (146 aa)
	CMQ_1494	Tpr domain containing protein. (396 aa)
	CMQ_3318	Telomere silencing protein. (985 aa)
	CMQ_4140	WD repeat protein. (544 aa)
	CMQ_3662	BZIP domain-containing protein. (281 aa)
	CMQ_3514	Uv-damaged DNA-binding protein. (1504 aa)
	CMQ_6578	DNA polymerase delta subunit. (197 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_135	CMQ_1444	F0XR44	F0XES1	Hmg-i/hmg-y, DNA-binding protein.	Uncharacterized protein.	0.775
CMQ_135	CMQ_2773	F0XR44	F0XGP9	Hmg-i/hmg-y, DNA-binding protein.	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.649
CMQ_135	CMQ_3662	F0XR44	F0X929	Hmg-i/hmg-y, DNA-binding protein.	BZIP domain-containing protein.	0.621
CMQ_135	CMQ_4140	F0XR44	F0X980	Hmg-i/hmg-y, DNA-binding protein.	WD repeat protein.	0.796
CMQ_135	CMQ_4277	F0XR44	F0XV50	Hmg-i/hmg-y, DNA-binding protein.	WD repeat protein.	0.852
CMQ_135	CMQ_5418	F0XR44	F0XG43	Hmg-i/hmg-y, DNA-binding protein.	Ubiquitin.	0.621
CMQ_135	CMQ_728	F0XR44	F0XFA7	Hmg-i/hmg-y, DNA-binding protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.850
CMQ_135	CMQ_740	F0XR44	F0XES2	Hmg-i/hmg-y, DNA-binding protein.	DNA repair protein.	0.805
CMQ_135	CMQ_8018	F0XR44	F0XRY8	Hmg-i/hmg-y, DNA-binding protein.	Ubiquitin c-terminal hydrolase; Belongs to the peptidase C19 family.	0.731
CMQ_1444	CMQ_135	F0XES1	F0XR44	Uncharacterized protein.	Hmg-i/hmg-y, DNA-binding protein.	0.775
CMQ_1444	CMQ_2773	F0XES1	F0XGP9	Uncharacterized protein.	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.653
CMQ_1444	CMQ_3662	F0XES1	F0X929	Uncharacterized protein.	BZIP domain-containing protein.	0.534
CMQ_1444	CMQ_5418	F0XES1	F0XG43	Uncharacterized protein.	Ubiquitin.	0.534
CMQ_1444	CMQ_6578	F0XES1	F0X7L1	Uncharacterized protein.	DNA polymerase delta subunit.	0.874
CMQ_1444	CMQ_728	F0XES1	F0XFA7	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.699
CMQ_1444	CMQ_740	F0XES1	F0XES2	Uncharacterized protein.	DNA repair protein.	0.775
CMQ_1494	CMQ_3662	F0XC06	F0X929	Tpr domain containing protein.	BZIP domain-containing protein.	0.493
CMQ_1494	CMQ_4277	F0XC06	F0XV50	Tpr domain containing protein.	WD repeat protein.	0.492
CMQ_1494	CMQ_5418	F0XC06	F0XG43	Tpr domain containing protein.	Ubiquitin.	0.493
CMQ_1494	CMQ_728	F0XC06	F0XFA7	Tpr domain containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.812