40 items (Grosmannia clavigera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_6683	Uncharacterized protein. (213 aa)
	CMQ_6946	Protein tyrosine phosphatase. (979 aa)
	CMQ_6926	Dual specificity phosphatase. (356 aa)
	CMQ_3662	BZIP domain-containing protein. (281 aa)
	CMQ_3537	Phospholipase/carboxylesterase. (278 aa)
	CMQ_3991	Uncharacterized protein. (277 aa)
	CMQ_3790	Duf1857 domain containing protein. (166 aa)
	CMQ_1012	Farnesyltransferase alpha subunit ram2. (552 aa)
	CMQ_1407	Phospholipase/carboxylesterase. (297 aa)
	CMQ_454	Izh family channel protein. (511 aa)
	CMQ_931	Protein-tyrosine phosphatase. (674 aa)
	CMQ_5400	Uncharacterized protein. (89 aa)
	CMQ_5418	Ubiquitin. (97 aa)
	CMQ_6346	WD repeat protein. (370 aa)
	CMQ_4939	Serine/threonine-protein phosphatase family. (627 aa)
	CMQ_2291	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (417 aa)
	CMQ_2409	Map kinase kinase. (718 aa)
	CMQ_2263	Acyl-protein thioesterase 1. (241 aa)
	CMQ_2722	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (502 aa)
	CMQ_2641	Non-specific serine/threonine protein kinase. (843 aa)
	CMQ_3156	Rho-like GTPase cdc42. (194 aa)
	CMQ_4365	Serine-threonine rich protein. (399 aa)
	CMQ_4582	Map kinase kinase. (533 aa)
	CMQ_4396	Rho GTPase. (199 aa)
	CMQ_4584	Exportin. (1103 aa)
	CMQ_4804	Protein tyrosine phosphatase. (712 aa)
	CMQ_5522	Serine/threonine-protein kinase. (1202 aa)
	CMQ_5650	Spectrin beta. (470 aa)
	CMQ_7866	Uncharacterized protein. (819 aa)
	CMQ_10	C2 domain containing protein. (583 aa)
	CMQ_7594	Protein-tyrosine phosphatase. (962 aa)
	CMQ_7200	Prenyl proteinase rce1. (333 aa)
	CMQ_2041	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (355 aa)
	CMQ_2053	Protein-tyrosine phosphatase 2. (675 aa)
	CMQ_1912	C6 zinc finger domain containing protein. (711 aa)
	CMQ_6322	Prohibitin. (276 aa)
	CMQ_5941	Non-specific serine/threonine protein kinase. (1035 aa)
	CMQ_3013	Putative dual specificity protein phosphatase 3. (448 aa)
	CMQ_3016	Map kinase kinase ste7. (560 aa)
	CMQ_3034	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (709 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_10	CMQ_3156	F0XQZ5	F0XH02	C2 domain containing protein.	Rho-like GTPase cdc42.	0.450
CMQ_10	CMQ_4396	F0XQZ5	F0XUM1	C2 domain containing protein.	Rho GTPase.	0.450
CMQ_1012	CMQ_2722	F0XEC1	F0XHM5	Farnesyltransferase alpha subunit ram2.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.999
CMQ_1012	CMQ_3156	F0XEC1	F0XH02	Farnesyltransferase alpha subunit ram2.	Rho-like GTPase cdc42.	0.555
CMQ_1012	CMQ_4396	F0XEC1	F0XUM1	Farnesyltransferase alpha subunit ram2.	Rho GTPase.	0.555
CMQ_1012	CMQ_7200	F0XEC1	F0XPQ8	Farnesyltransferase alpha subunit ram2.	Prenyl proteinase rce1.	0.881
CMQ_1912	CMQ_2641	F0XN13	F0XHK8	C6 zinc finger domain containing protein.	Non-specific serine/threonine protein kinase.	0.583
CMQ_1912	CMQ_3156	F0XN13	F0XH02	C6 zinc finger domain containing protein.	Rho-like GTPase cdc42.	0.527
CMQ_1912	CMQ_4396	F0XN13	F0XUM1	C6 zinc finger domain containing protein.	Rho GTPase.	0.527
CMQ_1912	CMQ_5941	F0XN13	F0XLV8	C6 zinc finger domain containing protein.	Non-specific serine/threonine protein kinase.	0.583
CMQ_2041	CMQ_2053	F0XNG3	F0XN98	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein-tyrosine phosphatase 2.	0.841
CMQ_2041	CMQ_2291	F0XNG3	F0XJP7	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.677
CMQ_2041	CMQ_2409	F0XNG3	F0XJ95	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Map kinase kinase.	0.891
CMQ_2041	CMQ_2641	F0XNG3	F0XHK8	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Non-specific serine/threonine protein kinase.	0.795
CMQ_2041	CMQ_3013	F0XNG3	F0XGV5	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Putative dual specificity protein phosphatase 3.	0.802
CMQ_2041	CMQ_3016	F0XNG3	F0XGQ1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Map kinase kinase ste7.	0.990
CMQ_2041	CMQ_3156	F0XNG3	F0XH02	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Rho-like GTPase cdc42.	0.738
CMQ_2041	CMQ_3662	F0XNG3	F0X929	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	BZIP domain-containing protein.	0.496
CMQ_2041	CMQ_3790	F0XNG3	F0XAR3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Duf1857 domain containing protein.	0.645
CMQ_2041	CMQ_3991	F0XNG3	F0XA24	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.789