60 items (Grosmannia clavigera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_7104	RNA-binding protein. (1284 aa)
	CMQ_7573	Meiosis protein. (633 aa)
	CMQ_7686	Actin cytoskeleton protein. (289 aa)
	CMQ_271	mRNA-binding post-transcriptional regulator. (399 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (747 aa)
	CMQ_165	Splicing factor 3b subunit 4. (414 aa)
	CMQ_187	Nf-x1 finger transcription factor. (1597 aa)
	CMQ_7956	U1 small nuclear ribonucleoprotein. (428 aa)
	CMQ_7950	Glycine-rich RNA-binding protein. (462 aa)
	CMQ_5683	Pre-mRNA splicing factor. (179 aa)
	CMQ_5713	Ntf2 and rrm domain containing protein. (544 aa)
	CMQ_5594	Rnp domain containing protein. (194 aa)
	CMQ_5722	U3 snornp-associated protein esf2. (358 aa)
	CMQ_4615	Ribosomal biogenesis protein gar2. (466 aa)
	CMQ_4780	RNA-binding protein. (754 aa)
	CMQ_8162	Pre-mRNA branch site protein. (178 aa)
	CMQ_8237	Pre-RNA splicing factor. (398 aa)
	CMQ_4942	Arginine serine-rich protein. (332 aa)
	CMQ_4978	U2 snrnp component ist3. (353 aa)
	CMQ_2400	RNA-binding protein. (562 aa)
	CMQ_2266	Translation initiation factor 4b. (593 aa)
	CMQ_5844	Nuclear mRNA splicing factor-associated protein. (436 aa)
	CMQ_3051	RNA-binding la domain containing protein. (259 aa)
	CMQ_2945	Pre-mRNA splicing factor. (1137 aa)
	CMQ_2981	Splicing factor u2af large subunit. (420 aa)
	CMQ_2616	Negative regulator of differentiation 1 protein. (819 aa)
	CMQ_2933	Nuclear cap-binding protein subunit 2. (218 aa)
	CMQ_3100	Rnp domain containing protein. (351 aa)
	CMQ_2911	Elongation factor 2. (1775 aa)
	CMQ_3132	Pentatricopeptide repeat protein. (1237 aa)
	CMQ_3105	RNA-binding protein. (616 aa)
	CMQ_513	RNA-binding protein. (484 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (311 aa)
	CMQ_1762	50S ribosomal subunit protein l15. (407 aa)
	CMQ_262	RNA-binding protein. (319 aa)
	CMQ_4484	Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1. (488 aa)
	CMQ_4491	RNA-binding protein. (501 aa)
	CMQ_4699	Yt521-b-like splicing factor. (521 aa)
	CMQ_4758	Nucleolar protein 12. (530 aa)
	CMQ_8001	Nucleic acid-binding protein. (314 aa)
	CMQ_7877	RNA-binding protein. (196 aa)
	CMQ_5987	RNA-binding domain containing protein. (200 aa)
	CMQ_5964	Heterogeneous nuclear ribonucleoprotein hrp1. (524 aa)
	CMQ_6032	Transformer-SR ribonucleoprotein. (235 aa)
	CMQ_6092	Ccr4-not core complex subunit. (1737 aa)
	CMQ_1847	RNA-binding protein. (883 aa)
	CMQ_1910	Rnp domain containing protein. (363 aa)
	CMQ_7178	Ribosome biogenesis protein. (822 aa)
	CMQ_681	U1 small nuclear ribonucleoprotein. (236 aa)
	CMQ_1446	Nucleic acid-binding protein. (306 aa)
	CMQ_701	RNA annealing protein. (251 aa)
	CMQ_1271	Nucleolin protein. (413 aa)
	CMQ_969	Rnp domain containing protein. (432 aa)
	CMQ_509	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (780 aa)
	CMQ_5239	Pre-RNA splicing factor. (398 aa)
	CMQ_3818	Pre-rRNA processing protein. (970 aa)
	CMQ_3997	RNA splicing factor. (610 aa)
	CMQ_6919	Peptidyl prolyl cis-trans isomerase. (170 aa)
	CMQ_6548	R3h domain protein. (662 aa)
	CMQ_6676	Nonsense-mediated mRNA decay protein. (808 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1271	CMQ_2933	F0XDB2	F0XGY1	Nucleolin protein.	Nuclear cap-binding protein subunit 2.	0.419
CMQ_1271	CMQ_3818	F0XDB2	F0XAI0	Nucleolin protein.	Pre-rRNA processing protein.	0.406
CMQ_1271	CMQ_4615	F0XDB2	F0XTN8	Nucleolin protein.	Ribosomal biogenesis protein gar2.	0.590
CMQ_1271	CMQ_4758	F0XDB2	F0XV02	Nucleolin protein.	Nucleolar protein 12.	0.551
CMQ_1271	CMQ_509	F0XDB2	F0XC66	Nucleolin protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.574
CMQ_1271	CMQ_513	F0XDB2	F0XFN5	Nucleolin protein.	RNA-binding protein.	0.523
CMQ_1271	CMQ_5722	F0XDB2	F0XSY5	Nucleolin protein.	U3 snornp-associated protein esf2.	0.944
CMQ_1271	CMQ_6032	F0XDB2	F0XM84	Nucleolin protein.	Transformer-SR ribonucleoprotein.	0.418
CMQ_1271	CMQ_7178	F0XDB2	F0XPM4	Nucleolin protein.	Ribosome biogenesis protein.	0.785
CMQ_1271	CMQ_8001	F0XDB2	F0XRQ1	Nucleolin protein.	Nucleic acid-binding protein.	0.433
CMQ_1271	CMQ_8237	F0XDB2	F0XKF8	Nucleolin protein.	Pre-RNA splicing factor.	0.433
CMQ_1271	TIF35	F0XDB2	F0XUN4	Nucleolin protein.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.441
CMQ_1446	CMQ_262	F0XET5	F0XRJ6	Nucleic acid-binding protein.	RNA-binding protein.	0.652
CMQ_1446	CMQ_2933	F0XET5	F0XGY1	Nucleic acid-binding protein.	Nuclear cap-binding protein subunit 2.	0.750
CMQ_1446	CMQ_4699	F0XET5	F0XUX5	Nucleic acid-binding protein.	Yt521-b-like splicing factor.	0.717
CMQ_1446	CMQ_509	F0XET5	F0XC66	Nucleic acid-binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.667
CMQ_1446	CMQ_5683	F0XET5	F0XSH5	Nucleic acid-binding protein.	Pre-mRNA splicing factor.	0.749
CMQ_1446	CMQ_6548	F0XET5	F0X755	Nucleic acid-binding protein.	R3h domain protein.	0.818
CMQ_1446	CMQ_6676	F0XET5	F0X6S9	Nucleic acid-binding protein.	Nonsense-mediated mRNA decay protein.	0.834
CMQ_1446	CMQ_701	F0XET5	F0XDF0	Nucleic acid-binding protein.	RNA annealing protein.	0.652