(20 nodes) DNA binding domain with preference for A/T rich regions network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_5725	Viral a-type inclusion protein. (651 aa)
	CMQ_4862	Hmg-i/hmg-y, DNA-binding protein. (3221 aa)
	CMQ_3569	Cupin domain containing protein. (684 aa)
	CMQ_4099	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1724 aa)
	CMQ_5137	Histone-lysine n-methyltransferase. (1246 aa)
	CMQ_573	Chromodomain containing protein. (433 aa)
	CMQ_1482	Gata transcription factor. (1431 aa)
	CMQ_4609	Uncharacterized protein. (1937 aa)
	CMQ_4289	Transcription factor jumonji. (1401 aa)
	CMQ_1279	Origin recognition complex subunit. (750 aa)
	CMQ_424	Forkhead domain containing protein. (1449 aa)
	CMQ_3166	Sister chromatid cohesion protein. (1958 aa)
	CMQ_6030	High mobility group protein. (177 aa)
	CMQ_6295	Hmg-i/hmg-y, DNA-binding protein. (907 aa)
	CMQ_3768	C6 zinc finger domain containing protein. (737 aa)
	CMQ_4005	Chromosome segregation protein. (786 aa)
	CMQ_6725	Hmg-i/hmg-y, DNA-binding protein. (470 aa)
	CMQ_7672	Phd finger domain protein. (1253 aa)
	CMQ_135	Hmg-i/hmg-y, DNA-binding protein. (1274 aa)
	CMQ_33	TFIIIC transcription initiation factor complex subunit. (2084 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_135	CMQ_7672	F0XR44	F0XQ20	Hmg-i/hmg-y, DNA-binding protein.	Phd finger domain protein.	0.702
CMQ_1482	CMQ_4862	F0XEA0	F0XTE7	Gata transcription factor.	Hmg-i/hmg-y, DNA-binding protein.	0.453
CMQ_3166	CMQ_5137	F0XI15	F0XBN9	Sister chromatid cohesion protein.	Histone-lysine n-methyltransferase.	0.654
CMQ_3166	CMQ_573	F0XI15	F0XDI4	Sister chromatid cohesion protein.	Chromodomain containing protein.	0.504
CMQ_33	CMQ_424	F0XRG9	F0XEP9	TFIIIC transcription initiation factor complex subunit.	Forkhead domain containing protein.	0.526
CMQ_4005	CMQ_4099	F0X858	F0XAE9	Chromosome segregation protein.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.408
CMQ_4099	CMQ_4005	F0XAE9	F0X858	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	Chromosome segregation protein.	0.408
CMQ_424	CMQ_33	F0XEP9	F0XRG9	Forkhead domain containing protein.	TFIIIC transcription initiation factor complex subunit.	0.526
CMQ_4862	CMQ_1482	F0XTE7	F0XEA0	Hmg-i/hmg-y, DNA-binding protein.	Gata transcription factor.	0.453
CMQ_5137	CMQ_3166	F0XBN9	F0XI15	Histone-lysine n-methyltransferase.	Sister chromatid cohesion protein.	0.654
CMQ_5137	CMQ_573	F0XBN9	F0XDI4	Histone-lysine n-methyltransferase.	Chromodomain containing protein.	0.547
CMQ_5137	CMQ_7672	F0XBN9	F0XQ20	Histone-lysine n-methyltransferase.	Phd finger domain protein.	0.557
CMQ_573	CMQ_3166	F0XDI4	F0XI15	Chromodomain containing protein.	Sister chromatid cohesion protein.	0.504
CMQ_573	CMQ_5137	F0XDI4	F0XBN9	Chromodomain containing protein.	Histone-lysine n-methyltransferase.	0.547
CMQ_7672	CMQ_135	F0XQ20	F0XR44	Phd finger domain protein.	Hmg-i/hmg-y, DNA-binding protein.	0.702
CMQ_7672	CMQ_5137	F0XQ20	F0XBN9	Phd finger domain protein.	Histone-lysine n-methyltransferase.	0.557