(37 nodes) Base excision repair network (Grosmannia clavigera)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	CMQ_6845	Mgmt family protein. (153 aa)
	CMQ_6578	DNA polymerase delta subunit. (197 aa)
	CMQ_6649	Udp-glucuronosyl udp-glucosyltransferase. (462 aa)
	CMQ_6645	ENDO3c domain-containing protein. (678 aa)
	CMQ_3890	Pre-mRNA splicing factor. (414 aa)
	CMQ_3904	DNA endonuclease. (467 aa)
	CMQ_3947	Ccch zinc finger DNA-binding protein. (631 aa)
	CMQ_4105	Flap structure-specific endonuclease. (749 aa)
	CMQ_3706	Methylated-DNA-protein-cysteine methyltransferase. (172 aa)
	CMQ_5212	DNA lyase. (795 aa)
	CMQ_5275	tRNA-specific adenosine deaminase. (684 aa)
	CMQ_377	G/U mismatch-specific DNA glycosylase. (294 aa)
	CMQ_363	DNA polymerase delta subunit. (532 aa)
	CMQ_1444	Uncharacterized protein. (461 aa)
	CMQ_5390	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2353 aa)
	FEN1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (856 aa)
	CMQ_2822	DNA repair protein sae2/ctip. (678 aa)
	CMQ_2570	Brct domain containing protein. (319 aa)
	CMQ_3152	DNA ligase. (872 aa)
	CMQ_2876	Cbf nf-y family transcription factor. (268 aa)
	CMQ_2946	Pth11-like integral membrane protein. (576 aa)
	CMQ_5866	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	CMQ_5825	Proliferating cell nuclear antigen. (660 aa)
	CMQ_8241	Cbf nf-y family transcription factor. (491 aa)
	CMQ_6279	DNA ligase. (905 aa)
	NTH1	Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (461 aa)
	CMQ_6076	DNA base-excision repair protein. (394 aa)
	CMQ_6090	Formamidopyrimidine-DNA glycosylase. (365 aa)
	CMQ_6407	SRP40_C domain-containing protein. (455 aa)
	CMQ_6329	Uncharacterized protein. (298 aa)
	UNG1	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (523 aa)
	CMQ_7138	Poly [ADP-ribose] polymerase. (440 aa)
	CMQ_7248	Glycosyl transferase family protein. (254 aa)
	CMQ_7944	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (180 aa)
	CMQ_7803	DNA polymerase. (1105 aa)
	CMQ_4733	Duf1168 domain containing protein. (232 aa)
	CMQ_4807	MT-a70 family protein; Belongs to the MT-A70-like family. (380 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1444	CMQ_3152	F0XES1	F0XH08	Uncharacterized protein.	DNA ligase.	0.450
CMQ_1444	CMQ_363	F0XES1	F0XEG2	Uncharacterized protein.	DNA polymerase delta subunit.	0.993
CMQ_1444	CMQ_4105	F0XES1	F0XA50	Uncharacterized protein.	Flap structure-specific endonuclease.	0.505
CMQ_1444	CMQ_5212	F0XES1	F0XBB2	Uncharacterized protein.	DNA lyase.	0.473
CMQ_1444	CMQ_5390	F0XES1	F0XG10	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.883
CMQ_1444	CMQ_5825	F0XES1	F0XIM0	Uncharacterized protein.	Proliferating cell nuclear antigen.	0.959
CMQ_1444	CMQ_5866	F0XES1	F0XIL9	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.959
CMQ_1444	CMQ_6279	F0XES1	F0XLA7	Uncharacterized protein.	DNA ligase.	0.402
CMQ_1444	CMQ_6578	F0XES1	F0X7L1	Uncharacterized protein.	DNA polymerase delta subunit.	0.874
CMQ_1444	CMQ_7803	F0XES1	F0XRT7	Uncharacterized protein.	DNA polymerase.	0.989
CMQ_1444	CMQ_8241	F0XES1	F0XKX2	Uncharacterized protein.	Cbf nf-y family transcription factor.	0.609
CMQ_1444	FEN1	F0XES1	F0XG13	Uncharacterized protein.	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.827
CMQ_2570	CMQ_3152	F0XGX6	F0XH08	Brct domain containing protein.	DNA ligase.	0.483
CMQ_2570	CMQ_4105	F0XGX6	F0XA50	Brct domain containing protein.	Flap structure-specific endonuclease.	0.667
CMQ_2570	CMQ_5212	F0XGX6	F0XBB2	Brct domain containing protein.	DNA lyase.	0.670
CMQ_2570	CMQ_5390	F0XGX6	F0XG10	Brct domain containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.542
CMQ_2570	CMQ_5825	F0XGX6	F0XIM0	Brct domain containing protein.	Proliferating cell nuclear antigen.	0.635
CMQ_2570	CMQ_5866	F0XGX6	F0XIL9	Brct domain containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.635
CMQ_2570	CMQ_6279	F0XGX6	F0XLA7	Brct domain containing protein.	DNA ligase.	0.483
CMQ_2570	FEN1	F0XGX6	F0XG13	Brct domain containing protein.	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.773