(52 nodes) Nucleotide excision repair network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_5875	High mobility group, hmg1/hMg2 protein. (328 aa)
	CMQ_2876	Cbf nf-y family transcription factor. (268 aa)
	CMQ_2606	Mating-type switching protein swi10. (366 aa)
	CMQ_3152	DNA ligase. (872 aa)
	CMQ_2582	WD repeat protein. (554 aa)
	CMQ_863	Uncharacterized protein. (146 aa)
	CMQ_965	DNA replication factor a subunit ssb3. (107 aa)
	CMQ_363	DNA polymerase delta subunit. (532 aa)
	CMQ_1444	Uncharacterized protein. (461 aa)
	CMQ_468	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (568 aa)
	CMQ_1006	Dead domain containing protein. (911 aa)
	CMQ_728	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (631 aa)
	CMQ_5390	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2353 aa)
	CMQ_3562	Rad4 family protein. (999 aa)
	CMQ_3568	Aaa ATPase domain containing protein. (357 aa)
	CMQ_3318	Telomere silencing protein. (985 aa)
	CMQ_4017	ATP-dependent DNA helicase. (1099 aa)
	CMQ_4030	DNA repair protein. (852 aa)
	CMQ_1494	Tpr domain containing protein. (396 aa)
	CMQ_135	Hmg-i/hmg-y, DNA-binding protein. (1274 aa)
	CMQ_264	DNA repair protein rhp26. (1202 aa)
	CMQ_7437	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (518 aa)
	CMQ_7360	Ubiquitin ligase subunit. (122 aa)
	CMQ_1961	Cdk-activating kinase assembly factor mat1. (426 aa)
	CMQ_1989	DNA replication factor c subunit. (395 aa)
	CMQ_6321	Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. (413 aa)
	CMQ_6447	mRNA splicing protein yju2. (320 aa)
	CMQ_6279	DNA ligase. (905 aa)
	CMQ_4781	Putative replication factor-a protein. (278 aa)
	CMQ_4705	Tfiih complex helicase. (850 aa)
	CMQ_4713	DNA excision repair protein rad2. (1287 aa)
	CMQ_4415	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (524 aa)
	CMQ_7944	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (180 aa)
	CMQ_4733	Duf1168 domain containing protein. (232 aa)
	CMQ_4803	Replication factor C subunit 1; Belongs to the activator 1 large subunit family. (1507 aa)
	CMQ_4910	DNA replication factor c subunit. (352 aa)
	CMQ_4322	Udp-galactopyranose mutase. (512 aa)
	CMQ_5655	Uv excision repair protein. (400 aa)
	CMQ_7803	DNA polymerase. (1105 aa)
	CMQ_6578	DNA polymerase delta subunit. (197 aa)
	CMQ_5595	RNA polymerase 2 general transcription and DNA repair factor tfiih component. (72 aa)
	CMQ_6932	Transcription factor tfiih subunit. (429 aa)
	CMQ_6917	DNA replication factor c subunit. (386 aa)
	CMQ_6844	DNA repair protein rad14. (382 aa)
	CMQ_6675	Tfiih complex helicase. (793 aa)
	CMQ_3514	Uv-damaged DNA-binding protein. (1504 aa)
	CMQ_8241	Cbf nf-y family transcription factor. (491 aa)
	CMQ_8074	Chromatin-associated protein. (593 aa)
	CMQ_4997	DNA repair protein. (1038 aa)
	CMQ_2187	Cyclin-like protein. (423 aa)
	CMQ_5825	Proliferating cell nuclear antigen. (660 aa)
	CMQ_5866	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1006	CMQ_135	F0XF48	F0XR44	Dead domain containing protein.	Hmg-i/hmg-y, DNA-binding protein.	0.841
CMQ_1006	CMQ_1494	F0XF48	F0XC06	Dead domain containing protein.	Tpr domain containing protein.	0.435
CMQ_1006	CMQ_1961	F0XF48	F0XN27	Dead domain containing protein.	Cdk-activating kinase assembly factor mat1.	0.968
CMQ_1006	CMQ_1989	F0XF48	F0XMX2	Dead domain containing protein.	DNA replication factor c subunit.	0.707
CMQ_1006	CMQ_2187	F0XF48	F0XJT0	Dead domain containing protein.	Cyclin-like protein.	0.967
CMQ_1006	CMQ_2582	F0XF48	F0XGS1	Dead domain containing protein.	WD repeat protein.	0.652
CMQ_1006	CMQ_2606	F0XF48	F0XHN8	Dead domain containing protein.	Mating-type switching protein swi10.	0.745
CMQ_1006	CMQ_264	F0XF48	F0XR10	Dead domain containing protein.	DNA repair protein rhp26.	0.506
CMQ_1006	CMQ_3152	F0XF48	F0XH08	Dead domain containing protein.	DNA ligase.	0.646
CMQ_1006	CMQ_3318	F0XF48	F0X9F5	Dead domain containing protein.	Telomere silencing protein.	0.435
CMQ_1006	CMQ_3514	F0XF48	F0X8D6	Dead domain containing protein.	Uv-damaged DNA-binding protein.	0.726
CMQ_1006	CMQ_3562	F0XF48	F0X8G8	Dead domain containing protein.	Rad4 family protein.	0.783
CMQ_1006	CMQ_3568	F0XF48	F0X8U1	Dead domain containing protein.	Aaa ATPase domain containing protein.	0.685
CMQ_1006	CMQ_363	F0XF48	F0XEG2	Dead domain containing protein.	DNA polymerase delta subunit.	0.644
CMQ_1006	CMQ_4017	F0XF48	F0X9I1	Dead domain containing protein.	ATP-dependent DNA helicase.	0.618
CMQ_1006	CMQ_4030	F0XF48	F0X9M3	Dead domain containing protein.	DNA repair protein.	0.783
CMQ_1006	CMQ_4322	F0XF48	F0XTJ1	Dead domain containing protein.	Udp-galactopyranose mutase.	0.435
CMQ_1006	CMQ_4415	F0XF48	F0XU06	Dead domain containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.970
CMQ_1006	CMQ_468	F0XF48	F0XEW7	Dead domain containing protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.621
CMQ_1006	CMQ_4705	F0XF48	F0XUE7	Dead domain containing protein.	Tfiih complex helicase.	0.975