(41 nodes) Mismatch repair network (Grosmannia clavigera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_6447	mRNA splicing protein yju2. (320 aa)
	CMQ_5825	Proliferating cell nuclear antigen. (660 aa)
	CMQ_5866	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	CMQ_3152	DNA ligase. (872 aa)
	CMQ_1636	DNA mismatch repair protein. (917 aa)
	CMQ_1251	Nuclear envelope protein cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (276 aa)
	CMQ_728	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (631 aa)
	CMQ_1444	Uncharacterized protein. (461 aa)
	CMQ_654	Exodeoxyribonuclease 1. (805 aa)
	CMQ_363	DNA polymerase delta subunit. (532 aa)
	CMQ_965	DNA replication factor a subunit ssb3. (107 aa)
	CMQ_863	Uncharacterized protein. (146 aa)
	CMQ_1494	Tpr domain containing protein. (396 aa)
	CMQ_6917	DNA replication factor c subunit. (386 aa)
	CMQ_6820	Fungal specific transcription factor domain containing protein. (762 aa)
	CMQ_6578	DNA polymerase delta subunit. (197 aa)
	CMQ_3568	Aaa ATPase domain containing protein. (357 aa)
	CMQ_4111	Uncharacterized protein. (633 aa)
	CMQ_3318	Telomere silencing protein. (985 aa)
	CMQ_4017	ATP-dependent DNA helicase. (1099 aa)
	CMQ_3591	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1190 aa)
	CMQ_4562	Heterokaryon incompatibility protein. (800 aa)
	CMQ_4704	DNA mismatch repair protein. (742 aa)
	CMQ_4781	Putative replication factor-a protein. (278 aa)
	CMQ_4755	DNA mismatch repair protein. (695 aa)
	CMQ_4733	Duf1168 domain containing protein. (232 aa)
	CMQ_4803	Replication factor C subunit 1; Belongs to the activator 1 large subunit family. (1507 aa)
	CMQ_4910	DNA replication factor c subunit. (352 aa)
	CMQ_4322	Udp-galactopyranose mutase. (512 aa)
	CMQ_5692	RNA exonuclease 4. (382 aa)
	CMQ_7992	DNA mismatch repair protein. (1228 aa)
	CMQ_7803	DNA polymerase. (1105 aa)
	CMQ_7944	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (180 aa)
	CMQ_186	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1180 aa)
	CMQ_135	Hmg-i/hmg-y, DNA-binding protein. (1274 aa)
	CMQ_93	DNA mismatch repair protein. (156 aa)
	CMQ_240	DNA mismatch repair protein. (499 aa)
	CMQ_7210	SsDNA-binding protein. (136 aa)
	CMQ_1990	DNA mismatch repair protein. (862 aa)
	CMQ_1989	DNA replication factor c subunit. (395 aa)
	CMQ_6279	DNA ligase. (905 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1251	CMQ_4017	F0XFN6	F0X9I1	Nuclear envelope protein cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins.	ATP-dependent DNA helicase.	0.704
CMQ_1251	CMQ_5825	F0XFN6	F0XIM0	Nuclear envelope protein cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins.	Proliferating cell nuclear antigen.	0.809
CMQ_1251	CMQ_5866	F0XFN6	F0XIL9	Nuclear envelope protein cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.809
CMQ_1251	CMQ_7210	F0XFN6	F0XPU4	Nuclear envelope protein cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins.	SsDNA-binding protein.	0.461
CMQ_135	CMQ_1444	F0XR44	F0XES1	Hmg-i/hmg-y, DNA-binding protein.	Uncharacterized protein.	0.775
CMQ_135	CMQ_1989	F0XR44	F0XMX2	Hmg-i/hmg-y, DNA-binding protein.	DNA replication factor c subunit.	0.986
CMQ_135	CMQ_3152	F0XR44	F0XH08	Hmg-i/hmg-y, DNA-binding protein.	DNA ligase.	0.805
CMQ_135	CMQ_3568	F0XR44	F0X8U1	Hmg-i/hmg-y, DNA-binding protein.	Aaa ATPase domain containing protein.	0.983
CMQ_135	CMQ_3591	F0XR44	F0X9Y4	Hmg-i/hmg-y, DNA-binding protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.486
CMQ_135	CMQ_363	F0XR44	F0XEG2	Hmg-i/hmg-y, DNA-binding protein.	DNA polymerase delta subunit.	0.691
CMQ_135	CMQ_4017	F0XR44	F0X9I1	Hmg-i/hmg-y, DNA-binding protein.	ATP-dependent DNA helicase.	0.854
CMQ_135	CMQ_4781	F0XR44	F0XUW4	Hmg-i/hmg-y, DNA-binding protein.	Putative replication factor-a protein.	0.766
CMQ_135	CMQ_4803	F0XR44	F0XTY5	Hmg-i/hmg-y, DNA-binding protein.	Replication factor C subunit 1; Belongs to the activator 1 large subunit family.	0.563
CMQ_135	CMQ_4910	F0XR44	F0XTX5	Hmg-i/hmg-y, DNA-binding protein.	DNA replication factor c subunit.	0.989
CMQ_135	CMQ_5825	F0XR44	F0XIM0	Hmg-i/hmg-y, DNA-binding protein.	Proliferating cell nuclear antigen.	0.925
CMQ_135	CMQ_5866	F0XR44	F0XIL9	Hmg-i/hmg-y, DNA-binding protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.925
CMQ_135	CMQ_6279	F0XR44	F0XLA7	Hmg-i/hmg-y, DNA-binding protein.	DNA ligase.	0.797
CMQ_135	CMQ_654	F0XR44	F0XEI8	Hmg-i/hmg-y, DNA-binding protein.	Exodeoxyribonuclease 1.	0.946
CMQ_135	CMQ_6820	F0XR44	F0X7B0	Hmg-i/hmg-y, DNA-binding protein.	Fungal specific transcription factor domain containing protein.	0.421
CMQ_135	CMQ_6917	F0XR44	F0X780	Hmg-i/hmg-y, DNA-binding protein.	DNA replication factor c subunit.	0.985