13 items (Grosmannia clavigera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMQ_2869	ATPase, aaa-2. (717 aa)
	CMQ_7457	Mitochondrial import inner membrane translocase subunit tim8; Belongs to the small Tim family. (94 aa)
	CMQ_736	Kinase-like protein. (820 aa)
	CMQ_1743	Nuclear protein snf4. (352 aa)
	CMQ_5857	Heat shock protein chaperonin; Belongs to the ClpA/ClpB family. (740 aa)
	CMQ_8252	Histone deacetylase. (585 aa)
	CMQ_6265	Snf1 kinase complex beta-subunit. (546 aa)
	CMQ_689	RhoGAP. (1268 aa)
	CMQ_725	C2h2 transcription factor. (581 aa)
	CMQ_641	Isochorismatase family protein. (236 aa)
	CMQ_7087	Heat shock protein hsp98 hsp104; Belongs to the ClpA/ClpB family. (910 aa)
	CMQ_788	Histone deacetylase rpd3. (746 aa)
	CMQ_6647	Jumonji family transcription factor. (1617 aa)

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_1743	CMQ_6265	F0XE96	F0XLU4	Nuclear protein snf4.	Snf1 kinase complex beta-subunit.	0.978
CMQ_1743	CMQ_736	F0XE96	F0XFH3	Nuclear protein snf4.	Kinase-like protein.	0.637
CMQ_2869	CMQ_5857	F0XIA1	F0XIE7	ATPase, aaa-2.	Heat shock protein chaperonin; Belongs to the ClpA/ClpB family.	0.922
CMQ_5857	CMQ_2869	F0XIE7	F0XIA1	Heat shock protein chaperonin; Belongs to the ClpA/ClpB family.	ATPase, aaa-2.	0.922
CMQ_5857	CMQ_7087	F0XIE7	F0XQK7	Heat shock protein chaperonin; Belongs to the ClpA/ClpB family.	Heat shock protein hsp98 hsp104; Belongs to the ClpA/ClpB family.	0.925
CMQ_6265	CMQ_1743	F0XLU4	F0XE96	Snf1 kinase complex beta-subunit.	Nuclear protein snf4.	0.978
CMQ_6265	CMQ_689	F0XLU4	F0XE95	Snf1 kinase complex beta-subunit.	RhoGAP.	0.978
CMQ_6265	CMQ_736	F0XLU4	F0XFH3	Snf1 kinase complex beta-subunit.	Kinase-like protein.	0.630
CMQ_6647	CMQ_725	F0X7L6	F0XD94	Jumonji family transcription factor.	C2h2 transcription factor.	0.740
CMQ_6647	CMQ_788	F0X7L6	F0XCS5	Jumonji family transcription factor.	Histone deacetylase rpd3.	0.637
CMQ_6647	CMQ_8252	F0X7L6	F0XKS6	Jumonji family transcription factor.	Histone deacetylase.	0.637
CMQ_689	CMQ_6265	F0XE95	F0XLU4	RhoGAP.	Snf1 kinase complex beta-subunit.	0.978
CMQ_689	CMQ_736	F0XE95	F0XFH3	RhoGAP.	Kinase-like protein.	0.637
CMQ_7087	CMQ_5857	F0XQK7	F0XIE7	Heat shock protein hsp98 hsp104; Belongs to the ClpA/ClpB family.	Heat shock protein chaperonin; Belongs to the ClpA/ClpB family.	0.925
CMQ_725	CMQ_6647	F0XD94	F0X7L6	C2h2 transcription factor.	Jumonji family transcription factor.	0.740
CMQ_725	CMQ_788	F0XD94	F0XCS5	C2h2 transcription factor.	Histone deacetylase rpd3.	0.544
CMQ_725	CMQ_8252	F0XD94	F0XKS6	C2h2 transcription factor.	Histone deacetylase.	0.521
CMQ_736	CMQ_1743	F0XFH3	F0XE96	Kinase-like protein.	Nuclear protein snf4.	0.637
CMQ_736	CMQ_6265	F0XFH3	F0XLU4	Kinase-like protein.	Snf1 kinase complex beta-subunit.	0.630
CMQ_736	CMQ_689	F0XFH3	F0XE95	Kinase-like protein.	RhoGAP.	0.637