(7 nodes) Mixed, incl. Thioredoxin-disulfide reductase activity, and Regulation of tetrapyrrole metabolic process network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G7Z7_TUBMM	Thioredoxin domain-containing protein. (258 aa)
	D5GCM5_TUBMM	DUF4149 domain-containing protein. (179 aa)
	D5GFF5_TUBMM	Uncharacterized protein. (121 aa)
	D5GFF6_TUBMM	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (229 aa)
	D5GJ24_TUBMM	Uncharacterized protein. (112 aa)
	D5GJB4_TUBMM	Uncharacterized protein. (145 aa)
	D5GL40_TUBMM	Uncharacterized protein. (378 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G7Z7_TUBMM	D5GFF5_TUBMM	D5G7Z7	D5GFF5	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.444
D5G7Z7_TUBMM	D5GFF6_TUBMM	D5G7Z7	D5GFF6	Thioredoxin domain-containing protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.444
D5GFF5_TUBMM	D5G7Z7_TUBMM	D5GFF5	D5G7Z7	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.444
D5GFF5_TUBMM	D5GFF6_TUBMM	D5GFF5	D5GFF6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.486
D5GFF5_TUBMM	D5GL40_TUBMM	D5GFF5	D5GL40	Uncharacterized protein.	Uncharacterized protein.	0.444
D5GFF6_TUBMM	D5G7Z7_TUBMM	D5GFF6	D5G7Z7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Thioredoxin domain-containing protein.	0.444
D5GFF6_TUBMM	D5GFF5_TUBMM	D5GFF6	D5GFF5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.486
D5GFF6_TUBMM	D5GL40_TUBMM	D5GFF6	D5GL40	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.444
D5GL40_TUBMM	D5GFF5_TUBMM	D5GL40	D5GFF5	Uncharacterized protein.	Uncharacterized protein.	0.444
D5GL40_TUBMM	D5GFF6_TUBMM	D5GL40	D5GFF6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.444