(6 nodes) Dynactin complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GB29_TUBMM	Uncharacterized protein. (231 aa)
	D5GCA0_TUBMM	Uncharacterized protein. (171 aa)
	D5GDK6_TUBMM	CAP-Gly domain-containing protein. (1326 aa)
	D5GIA5_TUBMM	Uncharacterized protein. (586 aa)
	D5GIC3_TUBMM	Uncharacterized protein. (442 aa)
	D5GLN2_TUBMM	Uncharacterized protein. (333 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5GB29_TUBMM	D5GCA0_TUBMM	D5GB29	D5GCA0	Uncharacterized protein.	Uncharacterized protein.	0.998
D5GB29_TUBMM	D5GDK6_TUBMM	D5GB29	D5GDK6	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.972
D5GB29_TUBMM	D5GIA5_TUBMM	D5GB29	D5GIA5	Uncharacterized protein.	Uncharacterized protein.	0.998
D5GB29_TUBMM	D5GIC3_TUBMM	D5GB29	D5GIC3	Uncharacterized protein.	Uncharacterized protein.	0.992
D5GB29_TUBMM	D5GLN2_TUBMM	D5GB29	D5GLN2	Uncharacterized protein.	Uncharacterized protein.	0.990
D5GCA0_TUBMM	D5GB29_TUBMM	D5GCA0	D5GB29	Uncharacterized protein.	Uncharacterized protein.	0.998
D5GCA0_TUBMM	D5GDK6_TUBMM	D5GCA0	D5GDK6	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.972
D5GCA0_TUBMM	D5GIA5_TUBMM	D5GCA0	D5GIA5	Uncharacterized protein.	Uncharacterized protein.	0.998
D5GCA0_TUBMM	D5GIC3_TUBMM	D5GCA0	D5GIC3	Uncharacterized protein.	Uncharacterized protein.	0.993
D5GCA0_TUBMM	D5GLN2_TUBMM	D5GCA0	D5GLN2	Uncharacterized protein.	Uncharacterized protein.	0.995
D5GDK6_TUBMM	D5GB29_TUBMM	D5GDK6	D5GB29	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.972
D5GDK6_TUBMM	D5GCA0_TUBMM	D5GDK6	D5GCA0	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.972
D5GDK6_TUBMM	D5GIA5_TUBMM	D5GDK6	D5GIA5	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.985
D5GDK6_TUBMM	D5GIC3_TUBMM	D5GDK6	D5GIC3	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.999
D5GDK6_TUBMM	D5GLN2_TUBMM	D5GDK6	D5GLN2	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.983
D5GIA5_TUBMM	D5GB29_TUBMM	D5GIA5	D5GB29	Uncharacterized protein.	Uncharacterized protein.	0.998
D5GIA5_TUBMM	D5GCA0_TUBMM	D5GIA5	D5GCA0	Uncharacterized protein.	Uncharacterized protein.	0.998
D5GIA5_TUBMM	D5GDK6_TUBMM	D5GIA5	D5GDK6	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.985
D5GIA5_TUBMM	D5GIC3_TUBMM	D5GIA5	D5GIC3	Uncharacterized protein.	Uncharacterized protein.	0.997
D5GIA5_TUBMM	D5GLN2_TUBMM	D5GIA5	D5GLN2	Uncharacterized protein.	Uncharacterized protein.	0.995