(5 nodes) rDNA heterochromatin, and Chromo domain, conserved site network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GBZ0_TUBMM	Uncharacterized protein. (370 aa)
	D5GD24_TUBMM	Chromo domain-containing protein. (225 aa)
	D5GED3_TUBMM	C2H2-type domain-containing protein. (619 aa)
	D5GLQ4_TUBMM	Uncharacterized protein. (328 aa)
	D5GPG9_TUBMM	Uncharacterized protein. (1480 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5GBZ0_TUBMM	D5GD24_TUBMM	D5GBZ0	D5GD24	Uncharacterized protein.	Chromo domain-containing protein.	0.610
D5GBZ0_TUBMM	D5GLQ4_TUBMM	D5GBZ0	D5GLQ4	Uncharacterized protein.	Uncharacterized protein.	0.610
D5GBZ0_TUBMM	D5GPG9_TUBMM	D5GBZ0	D5GPG9	Uncharacterized protein.	Uncharacterized protein.	0.430
D5GD24_TUBMM	D5GBZ0_TUBMM	D5GD24	D5GBZ0	Chromo domain-containing protein.	Uncharacterized protein.	0.610
D5GD24_TUBMM	D5GED3_TUBMM	D5GD24	D5GED3	Chromo domain-containing protein.	C2H2-type domain-containing protein.	0.439
D5GD24_TUBMM	D5GPG9_TUBMM	D5GD24	D5GPG9	Chromo domain-containing protein.	Uncharacterized protein.	0.835
D5GED3_TUBMM	D5GD24_TUBMM	D5GED3	D5GD24	C2H2-type domain-containing protein.	Chromo domain-containing protein.	0.439
D5GED3_TUBMM	D5GPG9_TUBMM	D5GED3	D5GPG9	C2H2-type domain-containing protein.	Uncharacterized protein.	0.947
D5GLQ4_TUBMM	D5GBZ0_TUBMM	D5GLQ4	D5GBZ0	Uncharacterized protein.	Uncharacterized protein.	0.610
D5GLQ4_TUBMM	D5GPG9_TUBMM	D5GLQ4	D5GPG9	Uncharacterized protein.	Uncharacterized protein.	0.713
D5GPG9_TUBMM	D5GBZ0_TUBMM	D5GPG9	D5GBZ0	Uncharacterized protein.	Uncharacterized protein.	0.430
D5GPG9_TUBMM	D5GD24_TUBMM	D5GPG9	D5GD24	Uncharacterized protein.	Chromo domain-containing protein.	0.835
D5GPG9_TUBMM	D5GED3_TUBMM	D5GPG9	D5GED3	Uncharacterized protein.	C2H2-type domain-containing protein.	0.947
D5GPG9_TUBMM	D5GLQ4_TUBMM	D5GPG9	D5GLQ4	Uncharacterized protein.	Uncharacterized protein.	0.713