26 items (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G4F4_TUBMM	BTB domain-containing protein. (598 aa)
	D5G568_TUBMM	Uncharacterized protein. (732 aa)
	D5G8B9_TUBMM	Uncharacterized protein. (987 aa)
	D5G8E2_TUBMM	Fork-head domain-containing protein. (358 aa)
	D5G8K9_TUBMM	Uncharacterized protein. (294 aa)
	D5G8S5_TUBMM	Uncharacterized protein. (420 aa)
	D5G8X6_TUBMM	PINc domain-containing protein. (1178 aa)
	D5G9I7_TUBMM	Uncharacterized protein. (507 aa)
	D5GAK5_TUBMM	Uncharacterized protein. (468 aa)
	D5GAQ1_TUBMM	Uncharacterized protein. (635 aa)
	D5GCB3_TUBMM	Uncharacterized protein. (549 aa)
	D5GDH0_TUBMM	Uncharacterized protein. (1351 aa)
	D5GG62_TUBMM	Uncharacterized protein. (699 aa)
	D5GGF2_TUBMM	Uncharacterized protein. (1340 aa)
	D5GGF6_TUBMM	Uncharacterized protein. (319 aa)
	D5GGV0_TUBMM	Uncharacterized protein. (511 aa)
	D5GHF4_TUBMM	Uncharacterized protein. (593 aa)
	D5GIS3_TUBMM	HMG box domain-containing protein. (705 aa)
	D5GKK1_TUBMM	Zn(2)-C6 fungal-type domain-containing protein. (1057 aa)
	D5GKK5_TUBMM	Uncharacterized protein. (702 aa)
	D5GM78_TUBMM	Uncharacterized protein. (465 aa)
	D5GMB7_TUBMM	Uncharacterized protein. (954 aa)
	D5GN51_TUBMM	Uncharacterized protein. (185 aa)
	D5GNQ4_TUBMM	Uncharacterized protein. (312 aa)
	D5GNV3_TUBMM	Uncharacterized protein. (602 aa)
	D5GQ27_TUBMM	Uncharacterized protein. (413 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G568_TUBMM	D5GIS3_TUBMM	D5G568	D5GIS3	Uncharacterized protein.	HMG box domain-containing protein.	0.420
D5G8B9_TUBMM	D5G8K9_TUBMM	D5G8B9	D5G8K9	Uncharacterized protein.	Uncharacterized protein.	0.879
D5G8B9_TUBMM	D5G8S5_TUBMM	D5G8B9	D5G8S5	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G8B9_TUBMM	D5GCB3_TUBMM	D5G8B9	D5GCB3	Uncharacterized protein.	Uncharacterized protein.	0.677
D5G8B9_TUBMM	D5GG62_TUBMM	D5G8B9	D5GG62	Uncharacterized protein.	Uncharacterized protein.	0.941
D5G8B9_TUBMM	D5GMB7_TUBMM	D5G8B9	D5GMB7	Uncharacterized protein.	Uncharacterized protein.	0.958
D5G8K9_TUBMM	D5G8B9_TUBMM	D5G8K9	D5G8B9	Uncharacterized protein.	Uncharacterized protein.	0.879
D5G8K9_TUBMM	D5G8S5_TUBMM	D5G8K9	D5G8S5	Uncharacterized protein.	Uncharacterized protein.	0.882
D5G8K9_TUBMM	D5GG62_TUBMM	D5G8K9	D5GG62	Uncharacterized protein.	Uncharacterized protein.	0.652
D5G8K9_TUBMM	D5GMB7_TUBMM	D5G8K9	D5GMB7	Uncharacterized protein.	Uncharacterized protein.	0.649
D5G8S5_TUBMM	D5G8B9_TUBMM	D5G8S5	D5G8B9	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G8S5_TUBMM	D5G8K9_TUBMM	D5G8S5	D5G8K9	Uncharacterized protein.	Uncharacterized protein.	0.882
D5G8S5_TUBMM	D5GCB3_TUBMM	D5G8S5	D5GCB3	Uncharacterized protein.	Uncharacterized protein.	0.521
D5G8S5_TUBMM	D5GG62_TUBMM	D5G8S5	D5GG62	Uncharacterized protein.	Uncharacterized protein.	0.972
D5G8S5_TUBMM	D5GMB7_TUBMM	D5G8S5	D5GMB7	Uncharacterized protein.	Uncharacterized protein.	0.974
D5GCB3_TUBMM	D5G8B9_TUBMM	D5GCB3	D5G8B9	Uncharacterized protein.	Uncharacterized protein.	0.677
D5GCB3_TUBMM	D5G8S5_TUBMM	D5GCB3	D5G8S5	Uncharacterized protein.	Uncharacterized protein.	0.521
D5GCB3_TUBMM	D5GMB7_TUBMM	D5GCB3	D5GMB7	Uncharacterized protein.	Uncharacterized protein.	0.554
D5GG62_TUBMM	D5G8B9_TUBMM	D5GG62	D5G8B9	Uncharacterized protein.	Uncharacterized protein.	0.941
D5GG62_TUBMM	D5G8K9_TUBMM	D5GG62	D5G8K9	Uncharacterized protein.	Uncharacterized protein.	0.652