(15 nodes) RNA polymerase II, core complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G674_TUBMM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (620 aa)
	D5G675_TUBMM	Uncharacterized protein. (436 aa)
	D5G763_TUBMM	RPOLD domain-containing protein. (340 aa)
	D5G7Q2_TUBMM	Uncharacterized protein. (174 aa)
	D5G8A7_TUBMM	RNA_pol_L_2 domain-containing protein. (119 aa)
	D5G9K1_TUBMM	Uncharacterized protein. (156 aa)
	D5GCT6_TUBMM	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (122 aa)
	D5GJJ3_TUBMM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	D5GKT6_TUBMM	Uncharacterized protein. (1025 aa)
	D5GM48_TUBMM	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1054 aa)
	D5GM63_TUBMM	S1 motif domain-containing protein. (180 aa)
	D5GMC8_TUBMM	Uncharacterized protein. (73 aa)
	D5GNK2_TUBMM	Uncharacterized protein. (76 aa)
	D5GNK6_TUBMM	Uncharacterized protein. (220 aa)
	D5GNN0_TUBMM	RPOL4c domain-containing protein. (146 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G674_TUBMM	D5G675_TUBMM	D5G674	D5G675	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Uncharacterized protein.	0.943
D5G674_TUBMM	D5G763_TUBMM	D5G674	D5G763	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	RPOLD domain-containing protein.	0.978
D5G674_TUBMM	D5G7Q2_TUBMM	D5G674	D5G7Q2	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Uncharacterized protein.	0.957
D5G674_TUBMM	D5G8A7_TUBMM	D5G674	D5G8A7	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	RNA_pol_L_2 domain-containing protein.	0.957
D5G674_TUBMM	D5G9K1_TUBMM	D5G674	D5G9K1	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Uncharacterized protein.	0.976
D5G674_TUBMM	D5GCT6_TUBMM	D5G674	D5GCT6	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.956
D5G674_TUBMM	D5GJJ3_TUBMM	D5G674	D5GJJ3	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.957
D5G674_TUBMM	D5GKT6_TUBMM	D5G674	D5GKT6	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Uncharacterized protein.	0.966
D5G674_TUBMM	D5GM48_TUBMM	D5G674	D5GM48	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.962
D5G674_TUBMM	D5GM63_TUBMM	D5G674	D5GM63	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	S1 motif domain-containing protein.	0.957
D5G674_TUBMM	D5GMC8_TUBMM	D5G674	D5GMC8	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Uncharacterized protein.	0.957
D5G674_TUBMM	D5GNK2_TUBMM	D5G674	D5GNK2	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Uncharacterized protein.	0.959
D5G674_TUBMM	D5GNK6_TUBMM	D5G674	D5GNK6	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	Uncharacterized protein.	0.973
D5G674_TUBMM	D5GNN0_TUBMM	D5G674	D5GNN0	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	RPOL4c domain-containing protein.	0.957
D5G675_TUBMM	D5G674_TUBMM	D5G675	D5G674	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.943
D5G675_TUBMM	D5G763_TUBMM	D5G675	D5G763	Uncharacterized protein.	RPOLD domain-containing protein.	0.978
D5G675_TUBMM	D5G7Q2_TUBMM	D5G675	D5G7Q2	Uncharacterized protein.	Uncharacterized protein.	0.957
D5G675_TUBMM	D5G8A7_TUBMM	D5G675	D5G8A7	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.957
D5G675_TUBMM	D5G9K1_TUBMM	D5G675	D5G9K1	Uncharacterized protein.	Uncharacterized protein.	0.976
D5G675_TUBMM	D5GCT6_TUBMM	D5G675	D5GCT6	Uncharacterized protein.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.956