(10 nodes) RNA polymerase II, core complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G763_TUBMM	RPOLD domain-containing protein. (340 aa)
	D5G7Q2_TUBMM	Uncharacterized protein. (174 aa)
	D5G8A7_TUBMM	RNA_pol_L_2 domain-containing protein. (119 aa)
	D5G9K1_TUBMM	Uncharacterized protein. (156 aa)
	D5GJJ3_TUBMM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	D5GM63_TUBMM	S1 motif domain-containing protein. (180 aa)
	D5GMC8_TUBMM	Uncharacterized protein. (73 aa)
	D5GNK2_TUBMM	Uncharacterized protein. (76 aa)
	D5GNK6_TUBMM	Uncharacterized protein. (220 aa)
	D5GNN0_TUBMM	RPOL4c domain-containing protein. (146 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G763_TUBMM	D5G7Q2_TUBMM	D5G763	D5G7Q2	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
D5G763_TUBMM	D5G8A7_TUBMM	D5G763	D5G8A7	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
D5G763_TUBMM	D5G9K1_TUBMM	D5G763	D5G9K1	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
D5G763_TUBMM	D5GJJ3_TUBMM	D5G763	D5GJJ3	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
D5G763_TUBMM	D5GM63_TUBMM	D5G763	D5GM63	RPOLD domain-containing protein.	S1 motif domain-containing protein.	0.999
D5G763_TUBMM	D5GMC8_TUBMM	D5G763	D5GMC8	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
D5G763_TUBMM	D5GNK2_TUBMM	D5G763	D5GNK2	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
D5G763_TUBMM	D5GNK6_TUBMM	D5G763	D5GNK6	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
D5G763_TUBMM	D5GNN0_TUBMM	D5G763	D5GNN0	RPOLD domain-containing protein.	RPOL4c domain-containing protein.	0.999
D5G7Q2_TUBMM	D5G763_TUBMM	D5G7Q2	D5G763	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
D5G7Q2_TUBMM	D5G8A7_TUBMM	D5G7Q2	D5G8A7	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
D5G7Q2_TUBMM	D5G9K1_TUBMM	D5G7Q2	D5G9K1	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GJJ3_TUBMM	D5G7Q2	D5GJJ3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
D5G7Q2_TUBMM	D5GM63_TUBMM	D5G7Q2	D5GM63	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
D5G7Q2_TUBMM	D5GMC8_TUBMM	D5G7Q2	D5GMC8	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GNK2_TUBMM	D5G7Q2	D5GNK2	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GNK6_TUBMM	D5G7Q2	D5GNK6	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GNN0_TUBMM	D5G7Q2	D5GNN0	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
D5G8A7_TUBMM	D5G763_TUBMM	D5G8A7	D5G763	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.999
D5G8A7_TUBMM	D5G7Q2_TUBMM	D5G8A7	D5G7Q2	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999