18 items (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G3Z8_TUBMM	Uncharacterized protein. (265 aa)
	D5G6A4_TUBMM	Uncharacterized protein. (517 aa)
	D5G6P2_TUBMM	Uncharacterized protein. (195 aa)
	D5G749_TUBMM	TPR_REGION domain-containing protein. (818 aa)
	D5G8I5_TUBMM	BZIP domain-containing protein. (574 aa)
	D5G9V1_TUBMM	Uncharacterized protein. (413 aa)
	D5GA54_TUBMM	WD_REPEATS_REGION domain-containing protein. (569 aa)
	D5GC55_TUBMM	DUF5595 domain-containing protein. (650 aa)
	D5GC89_TUBMM	BZIP domain-containing protein. (377 aa)
	D5GD03_TUBMM	Uncharacterized protein. (413 aa)
	D5GGY5_TUBMM	BZIP domain-containing protein. (444 aa)
	D5GJM9_TUBMM	Csm1 domain-containing protein. (551 aa)
	D5GK57_TUBMM	BZIP domain-containing protein. (401 aa)
	D5GN18_TUBMM	Uncharacterized protein. (620 aa)
	D5GNG7_TUBMM	Spc7 domain-containing protein. (1670 aa)
	D5GNL6_TUBMM	DHR10 domain-containing protein. (445 aa)
	D5GNP8_TUBMM	Uncharacterized protein. (277 aa)
	D5GPZ5_TUBMM	Uncharacterized protein. (137 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G3Z8_TUBMM	D5G6A4_TUBMM	D5G3Z8	D5G6A4	Uncharacterized protein.	Uncharacterized protein.	0.616
D5G3Z8_TUBMM	D5G6P2_TUBMM	D5G3Z8	D5G6P2	Uncharacterized protein.	Uncharacterized protein.	0.997
D5G3Z8_TUBMM	D5G8I5_TUBMM	D5G3Z8	D5G8I5	Uncharacterized protein.	BZIP domain-containing protein.	0.616
D5G3Z8_TUBMM	D5GC55_TUBMM	D5G3Z8	D5GC55	Uncharacterized protein.	DUF5595 domain-containing protein.	0.999
D5G3Z8_TUBMM	D5GD03_TUBMM	D5G3Z8	D5GD03	Uncharacterized protein.	Uncharacterized protein.	0.616
D5G3Z8_TUBMM	D5GGY5_TUBMM	D5G3Z8	D5GGY5	Uncharacterized protein.	BZIP domain-containing protein.	0.616
D5G3Z8_TUBMM	D5GJM9_TUBMM	D5G3Z8	D5GJM9	Uncharacterized protein.	Csm1 domain-containing protein.	0.480
D5G3Z8_TUBMM	D5GK57_TUBMM	D5G3Z8	D5GK57	Uncharacterized protein.	BZIP domain-containing protein.	0.616
D5G3Z8_TUBMM	D5GN18_TUBMM	D5G3Z8	D5GN18	Uncharacterized protein.	Uncharacterized protein.	0.958
D5G3Z8_TUBMM	D5GNG7_TUBMM	D5G3Z8	D5GNG7	Uncharacterized protein.	Spc7 domain-containing protein.	0.549
D5G3Z8_TUBMM	D5GNL6_TUBMM	D5G3Z8	D5GNL6	Uncharacterized protein.	DHR10 domain-containing protein.	0.999
D5G3Z8_TUBMM	D5GPZ5_TUBMM	D5G3Z8	D5GPZ5	Uncharacterized protein.	Uncharacterized protein.	0.437
D5G6A4_TUBMM	D5G3Z8_TUBMM	D5G6A4	D5G3Z8	Uncharacterized protein.	Uncharacterized protein.	0.616
D5G6A4_TUBMM	D5G9V1_TUBMM	D5G6A4	D5G9V1	Uncharacterized protein.	Uncharacterized protein.	0.608
D5G6A4_TUBMM	D5GC55_TUBMM	D5G6A4	D5GC55	Uncharacterized protein.	DUF5595 domain-containing protein.	0.555
D5G6A4_TUBMM	D5GC89_TUBMM	D5G6A4	D5GC89	Uncharacterized protein.	BZIP domain-containing protein.	0.747
D5G6A4_TUBMM	D5GNL6_TUBMM	D5G6A4	D5GNL6	Uncharacterized protein.	DHR10 domain-containing protein.	0.603
D5G6A4_TUBMM	D5GPZ5_TUBMM	D5G6A4	D5GPZ5	Uncharacterized protein.	Uncharacterized protein.	0.513
D5G6P2_TUBMM	D5G3Z8_TUBMM	D5G6P2	D5G3Z8	Uncharacterized protein.	Uncharacterized protein.	0.997
D5G6P2_TUBMM	D5GC55_TUBMM	D5G6P2	D5GC55	Uncharacterized protein.	DUF5595 domain-containing protein.	0.992