(11 nodes) Mixed, incl. Carbohydrate-binding WSC, and FANCM-MHF complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G4B6_TUBMM	Uncharacterized protein. (591 aa)
	D5G662_TUBMM	Uncharacterized protein. (1543 aa)
	D5GA13_TUBMM	Uncharacterized protein. (137 aa)
	D5GBE2_TUBMM	Zn(2)-C6 fungal-type domain-containing protein. (748 aa)
	D5GD21_TUBMM	WSC domain-containing protein. (297 aa)
	D5GDQ9_TUBMM	Uncharacterized protein. (239 aa)
	D5GFK2_TUBMM	Zds_C domain-containing protein. (560 aa)
	D5GHM3_TUBMM	WSC domain-containing protein. (213 aa)
	D5GIJ6_TUBMM	Uncharacterized protein. (75 aa)
	D5GJ72_TUBMM	Uncharacterized protein. (357 aa)
	D5GPB0_TUBMM	Uncharacterized protein. (413 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4B6_TUBMM	D5GJ72_TUBMM	D5G4B6	D5GJ72	Uncharacterized protein.	Uncharacterized protein.	0.708
D5G662_TUBMM	D5GJ72_TUBMM	D5G662	D5GJ72	Uncharacterized protein.	Uncharacterized protein.	0.481
D5GA13_TUBMM	D5GJ72_TUBMM	D5GA13	D5GJ72	Uncharacterized protein.	Uncharacterized protein.	0.481
D5GBE2_TUBMM	D5GJ72_TUBMM	D5GBE2	D5GJ72	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.477
D5GD21_TUBMM	D5GJ72_TUBMM	D5GD21	D5GJ72	WSC domain-containing protein.	Uncharacterized protein.	0.481
D5GDQ9_TUBMM	D5GJ72_TUBMM	D5GDQ9	D5GJ72	Uncharacterized protein.	Uncharacterized protein.	0.481
D5GFK2_TUBMM	D5GJ72_TUBMM	D5GFK2	D5GJ72	Zds_C domain-containing protein.	Uncharacterized protein.	0.482
D5GHM3_TUBMM	D5GJ72_TUBMM	D5GHM3	D5GJ72	WSC domain-containing protein.	Uncharacterized protein.	0.481
D5GIJ6_TUBMM	D5GJ72_TUBMM	D5GIJ6	D5GJ72	Uncharacterized protein.	Uncharacterized protein.	0.477
D5GJ72_TUBMM	D5G4B6_TUBMM	D5GJ72	D5G4B6	Uncharacterized protein.	Uncharacterized protein.	0.708
D5GJ72_TUBMM	D5G662_TUBMM	D5GJ72	D5G662	Uncharacterized protein.	Uncharacterized protein.	0.481
D5GJ72_TUBMM	D5GA13_TUBMM	D5GJ72	D5GA13	Uncharacterized protein.	Uncharacterized protein.	0.481
D5GJ72_TUBMM	D5GBE2_TUBMM	D5GJ72	D5GBE2	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.477
D5GJ72_TUBMM	D5GD21_TUBMM	D5GJ72	D5GD21	Uncharacterized protein.	WSC domain-containing protein.	0.481
D5GJ72_TUBMM	D5GDQ9_TUBMM	D5GJ72	D5GDQ9	Uncharacterized protein.	Uncharacterized protein.	0.481
D5GJ72_TUBMM	D5GFK2_TUBMM	D5GJ72	D5GFK2	Uncharacterized protein.	Zds_C domain-containing protein.	0.482
D5GJ72_TUBMM	D5GHM3_TUBMM	D5GJ72	D5GHM3	Uncharacterized protein.	WSC domain-containing protein.	0.481
D5GJ72_TUBMM	D5GIJ6_TUBMM	D5GJ72	D5GIJ6	Uncharacterized protein.	Uncharacterized protein.	0.477
D5GJ72_TUBMM	D5GPB0_TUBMM	D5GJ72	D5GPB0	Uncharacterized protein.	Uncharacterized protein.	0.482
D5GPB0_TUBMM	D5GJ72_TUBMM	D5GPB0	D5GJ72	Uncharacterized protein.	Uncharacterized protein.	0.482