(23 nodes) Cytosolic ribosome network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G439_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	D5G4Z3_TUBMM	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (214 aa)
	D5G5A7_TUBMM	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	D5G5E4_TUBMM	Uncharacterized protein. (131 aa)
	D5G788_TUBMM	Uncharacterized protein. (92 aa)
	D5G9G5_TUBMM	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (104 aa)
	D5GA84_TUBMM	Ribosomal_L28e domain-containing protein. (125 aa)
	D5GAX2_TUBMM	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (261 aa)
	D5GDI2_TUBMM	WD_REPEATS_REGION domain-containing protein. (304 aa)
	D5GE72_TUBMM	Uncharacterized protein. (131 aa)
	D5GET6_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (199 aa)
	D5GG61_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	D5GHS1_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	D5GJ81_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (189 aa)
	D5GK13_TUBMM	Uncharacterized protein. (194 aa)
	D5GKQ8_TUBMM	Uncharacterized protein. (126 aa)
	D5GKY3_TUBMM	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
	D5GLT3_TUBMM	Ribosomal_S10 domain-containing protein. (117 aa)
	D5GLV6_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	D5GMA2_TUBMM	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (195 aa)
	D5GME7_TUBMM	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	D5GMR6_TUBMM	S4 RNA-binding domain-containing protein. (342 aa)
	D5GN28_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (640 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G439_TUBMM	D5G4Z3_TUBMM	D5G439	D5G4Z3	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
D5G439_TUBMM	D5G5A7_TUBMM	D5G439	D5G5A7	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
D5G439_TUBMM	D5G5E4_TUBMM	D5G439	D5G5E4	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
D5G439_TUBMM	D5G788_TUBMM	D5G439	D5G788	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
D5G439_TUBMM	D5G9G5_TUBMM	D5G439	D5G9G5	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
D5G439_TUBMM	D5GA84_TUBMM	D5G439	D5GA84	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_L28e domain-containing protein.	0.999
D5G439_TUBMM	D5GAX2_TUBMM	D5G439	D5GAX2	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
D5G439_TUBMM	D5GDI2_TUBMM	D5G439	D5GDI2	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	WD_REPEATS_REGION domain-containing protein.	0.999
D5G439_TUBMM	D5GE72_TUBMM	D5G439	D5GE72	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
D5G439_TUBMM	D5GET6_TUBMM	D5G439	D5GET6	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
D5G439_TUBMM	D5GG61_TUBMM	D5G439	D5GG61	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
D5G439_TUBMM	D5GHS1_TUBMM	D5G439	D5GHS1	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
D5G439_TUBMM	D5GJ81_TUBMM	D5G439	D5GJ81	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.999
D5G439_TUBMM	D5GK13_TUBMM	D5G439	D5GK13	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
D5G439_TUBMM	D5GKQ8_TUBMM	D5G439	D5GKQ8	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
D5G439_TUBMM	D5GKY3_TUBMM	D5G439	D5GKY3	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
D5G439_TUBMM	D5GLT3_TUBMM	D5G439	D5GLT3	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_S10 domain-containing protein.	0.999
D5G439_TUBMM	D5GLV6_TUBMM	D5G439	D5GLV6	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999
D5G439_TUBMM	D5GMA2_TUBMM	D5G439	D5GMA2	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
D5G439_TUBMM	D5GME7_TUBMM	D5G439	D5GME7	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999