(8 nodes) U4 snRNA 3-end processing network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G6D5_TUBMM	RNase_PH domain-containing protein. (278 aa)
	D5G6R2_TUBMM	Uncharacterized protein. (273 aa)
	D5GGQ9_TUBMM	HRDC domain-containing protein. (838 aa)
	D5GH15_TUBMM	Uncharacterized protein. (206 aa)
	D5GIS7_TUBMM	Uncharacterized protein. (279 aa)
	D5GK20_TUBMM	Uncharacterized protein. (355 aa)
	D5GLH6_TUBMM	RNase_PH domain-containing protein. (330 aa)
	D5GMF7_TUBMM	RNase_PH domain-containing protein. (204 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G6D5_TUBMM	D5G6R2_TUBMM	D5G6D5	D5G6R2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
D5G6D5_TUBMM	D5GGQ9_TUBMM	D5G6D5	D5GGQ9	RNase_PH domain-containing protein.	HRDC domain-containing protein.	0.999
D5G6D5_TUBMM	D5GH15_TUBMM	D5G6D5	D5GH15	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
D5G6D5_TUBMM	D5GIS7_TUBMM	D5G6D5	D5GIS7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
D5G6D5_TUBMM	D5GK20_TUBMM	D5G6D5	D5GK20	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
D5G6D5_TUBMM	D5GLH6_TUBMM	D5G6D5	D5GLH6	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
D5G6D5_TUBMM	D5GMF7_TUBMM	D5G6D5	D5GMF7	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
D5G6R2_TUBMM	D5G6D5_TUBMM	D5G6R2	D5G6D5	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
D5G6R2_TUBMM	D5GGQ9_TUBMM	D5G6R2	D5GGQ9	Uncharacterized protein.	HRDC domain-containing protein.	0.999
D5G6R2_TUBMM	D5GH15_TUBMM	D5G6R2	D5GH15	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G6R2_TUBMM	D5GIS7_TUBMM	D5G6R2	D5GIS7	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G6R2_TUBMM	D5GK20_TUBMM	D5G6R2	D5GK20	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G6R2_TUBMM	D5GLH6_TUBMM	D5G6R2	D5GLH6	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
D5G6R2_TUBMM	D5GMF7_TUBMM	D5G6R2	D5GMF7	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
D5GGQ9_TUBMM	D5G6D5_TUBMM	D5GGQ9	D5G6D5	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.999
D5GGQ9_TUBMM	D5G6R2_TUBMM	D5GGQ9	D5G6R2	HRDC domain-containing protein.	Uncharacterized protein.	0.999
D5GGQ9_TUBMM	D5GH15_TUBMM	D5GGQ9	D5GH15	HRDC domain-containing protein.	Uncharacterized protein.	0.999
D5GGQ9_TUBMM	D5GIS7_TUBMM	D5GGQ9	D5GIS7	HRDC domain-containing protein.	Uncharacterized protein.	0.999
D5GGQ9_TUBMM	D5GK20_TUBMM	D5GGQ9	D5GK20	HRDC domain-containing protein.	Uncharacterized protein.	0.999
D5GGQ9_TUBMM	D5GLH6_TUBMM	D5GGQ9	D5GLH6	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.999