(46 nodes) Retrograde transport at the Trans-Golgi-Network, and SNAP receptor activity network (Tuber melanosporum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G3U7_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (254 aa)
	D5G3X0_TUBMM	Vps54 domain-containing protein. (984 aa)
	D5G544_TUBMM	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events. (395 aa)
	D5G545_TUBMM	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events. (250 aa)
	D5G584_TUBMM	Uncharacterized protein. (742 aa)
	D5G5E5_TUBMM	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (228 aa)
	D5G5V2_TUBMM	Uncharacterized protein. (237 aa)
	D5G6S2_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (316 aa)
	D5G750_TUBMM	Uncharacterized protein. (854 aa)
	D5G7B9_TUBMM	Vps53_N domain-containing protein. (857 aa)
	D5G7H9_TUBMM	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	D5G7N6_TUBMM	V-SNARE coiled-coil homology domain-containing protein. (118 aa)
	D5G867_TUBMM	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (681 aa)
	D5G875_TUBMM	Uncharacterized protein; Belongs to the AAA ATPase family. (560 aa)
	D5G8R8_TUBMM	RIC1 domain-containing protein. (1105 aa)
	D5G964_TUBMM	Uncharacterized protein. (306 aa)
	D5GA07_TUBMM	TMF_TATA_bd domain-containing protein. (746 aa)
	D5GAB5_TUBMM	Uncharacterized protein. (291 aa)
	D5GB39_TUBMM	Uncharacterized protein. (787 aa)
	D5GBD1_TUBMM	Uncharacterized protein. (208 aa)
	D5GBK4_TUBMM	Uncharacterized protein. (1002 aa)
	D5GBL1_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (261 aa)
	D5GC37_TUBMM	Uncharacterized protein. (407 aa)
	D5GCR7_TUBMM	ATPase_AAA_core domain-containing protein. (183 aa)
	D5GCR8_TUBMM	Uncharacterized protein. (117 aa)
	D5GD19_TUBMM	Dsl1_C domain-containing protein. (848 aa)
	D5GD39_TUBMM	Uncharacterized protein. (188 aa)
	D5GE00_TUBMM	Uncharacterized protein. (295 aa)
	D5GEU0_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (249 aa)
	D5GFJ6_TUBMM	Uncharacterized protein. (61 aa)
	D5GG33_TUBMM	Uncharacterized protein. (203 aa)
	D5GH62_TUBMM	Uncharacterized protein. (483 aa)
	D5GHK7_TUBMM	Uncharacterized protein. (257 aa)
	D5GHX8_TUBMM	AAA domain-containing protein. (958 aa)
	D5GIR1_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (226 aa)
	D5GIW0_TUBMM	Thioredoxin reductase. (344 aa)
	D5GJQ9_TUBMM	Uncharacterized protein. (703 aa)
	D5GJS7_TUBMM	Uncharacterized protein. (766 aa)
	D5GK94_TUBMM	Cog4 domain-containing protein. (846 aa)
	D5GKC9_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (212 aa)
	D5GKK0_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (346 aa)
	D5GLM6_TUBMM	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (364 aa)
	D5GM89_TUBMM	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	D5GNU5_TUBMM	Uncharacterized protein; Belongs to the synaptobrevin family. (238 aa)
	D5GP22_TUBMM	t-SNARE coiled-coil homology domain-containing protein. (356 aa)
	D5GPA9_TUBMM	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (279 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G3U7_TUBMM	D5G3X0_TUBMM	D5G3U7	D5G3X0	t-SNARE coiled-coil homology domain-containing protein.	Vps54 domain-containing protein.	0.864
D5G3U7_TUBMM	D5G544_TUBMM	D5G3U7	D5G544	t-SNARE coiled-coil homology domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.675
D5G3U7_TUBMM	D5G545_TUBMM	D5G3U7	D5G545	t-SNARE coiled-coil homology domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.675
D5G3U7_TUBMM	D5G584_TUBMM	D5G3U7	D5G584	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.638
D5G3U7_TUBMM	D5G5E5_TUBMM	D5G3U7	D5G5E5	t-SNARE coiled-coil homology domain-containing protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.903
D5G3U7_TUBMM	D5G5V2_TUBMM	D5G3U7	D5G5V2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.590
D5G3U7_TUBMM	D5G6S2_TUBMM	D5G3U7	D5G6S2	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.602
D5G3U7_TUBMM	D5G750_TUBMM	D5G3U7	D5G750	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.604
D5G3U7_TUBMM	D5G7B9_TUBMM	D5G3U7	D5G7B9	t-SNARE coiled-coil homology domain-containing protein.	Vps53_N domain-containing protein.	0.760
D5G3U7_TUBMM	D5G7H9_TUBMM	D5G3U7	D5G7H9	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.987
D5G3U7_TUBMM	D5G7N6_TUBMM	D5G3U7	D5G7N6	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.998
D5G3U7_TUBMM	D5G867_TUBMM	D5G3U7	D5G867	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.547
D5G3U7_TUBMM	D5G8R8_TUBMM	D5G3U7	D5G8R8	t-SNARE coiled-coil homology domain-containing protein.	RIC1 domain-containing protein.	0.612
D5G3U7_TUBMM	D5G964_TUBMM	D5G3U7	D5G964	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.597
D5G3U7_TUBMM	D5GAB5_TUBMM	D5G3U7	D5GAB5	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.954
D5G3U7_TUBMM	D5GBD1_TUBMM	D5G3U7	D5GBD1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.834
D5G3U7_TUBMM	D5GBL1_TUBMM	D5G3U7	D5GBL1	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.991
D5G3U7_TUBMM	D5GE00_TUBMM	D5G3U7	D5GE00	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.522
D5G3U7_TUBMM	D5GEU0_TUBMM	D5G3U7	D5GEU0	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.736
D5G3U7_TUBMM	D5GG33_TUBMM	D5G3U7	D5GG33	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.625