(5 nodes) Snf7, and MIT domain superfamily network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G6E7_TUBMM	Uncharacterized protein. (197 aa)
	D5GDW2_TUBMM	Uncharacterized protein; Belongs to the AAA ATPase family. (432 aa)
	D5GF33_TUBMM	Uncharacterized protein. (293 aa)
	D5GIX6_TUBMM	Uncharacterized protein. (389 aa)
	D5GPU7_TUBMM	Uncharacterized protein. (216 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G6E7_TUBMM	D5GDW2_TUBMM	D5G6E7	D5GDW2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.998
D5G6E7_TUBMM	D5GF33_TUBMM	D5G6E7	D5GF33	Uncharacterized protein.	Uncharacterized protein.	0.995
D5G6E7_TUBMM	D5GIX6_TUBMM	D5G6E7	D5GIX6	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G6E7_TUBMM	D5GPU7_TUBMM	D5G6E7	D5GPU7	Uncharacterized protein.	Uncharacterized protein.	0.953
D5GDW2_TUBMM	D5G6E7_TUBMM	D5GDW2	D5G6E7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.998
D5GDW2_TUBMM	D5GF33_TUBMM	D5GDW2	D5GF33	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.987
D5GDW2_TUBMM	D5GIX6_TUBMM	D5GDW2	D5GIX6	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.999
D5GDW2_TUBMM	D5GPU7_TUBMM	D5GDW2	D5GPU7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.993
D5GF33_TUBMM	D5G6E7_TUBMM	D5GF33	D5G6E7	Uncharacterized protein.	Uncharacterized protein.	0.995
D5GF33_TUBMM	D5GDW2_TUBMM	D5GF33	D5GDW2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.987
D5GF33_TUBMM	D5GIX6_TUBMM	D5GF33	D5GIX6	Uncharacterized protein.	Uncharacterized protein.	0.967
D5GF33_TUBMM	D5GPU7_TUBMM	D5GF33	D5GPU7	Uncharacterized protein.	Uncharacterized protein.	0.948
D5GIX6_TUBMM	D5G6E7_TUBMM	D5GIX6	D5G6E7	Uncharacterized protein.	Uncharacterized protein.	0.999
D5GIX6_TUBMM	D5GDW2_TUBMM	D5GIX6	D5GDW2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.999
D5GIX6_TUBMM	D5GF33_TUBMM	D5GIX6	D5GF33	Uncharacterized protein.	Uncharacterized protein.	0.967
D5GIX6_TUBMM	D5GPU7_TUBMM	D5GIX6	D5GPU7	Uncharacterized protein.	Uncharacterized protein.	0.999
D5GPU7_TUBMM	D5G6E7_TUBMM	D5GPU7	D5G6E7	Uncharacterized protein.	Uncharacterized protein.	0.953
D5GPU7_TUBMM	D5GDW2_TUBMM	D5GPU7	D5GDW2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.993
D5GPU7_TUBMM	D5GF33_TUBMM	D5GPU7	D5GF33	Uncharacterized protein.	Uncharacterized protein.	0.948
D5GPU7_TUBMM	D5GIX6_TUBMM	D5GPU7	D5GIX6	Uncharacterized protein.	Uncharacterized protein.	0.999