(12 nodes) Mixed, incl. Transcription export complex 2, and XPC complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G6P0_TUBMM	Mitochondrial inner membrane protease subunit. (418 aa)
	D5G9D2_TUBMM	Uncharacterized protein. (88 aa)
	D5G9W3_TUBMM	PCI domain-containing protein. (428 aa)
	D5GAC7_TUBMM	Uncharacterized protein. (1569 aa)
	D5GAV9_TUBMM	Poly [ADP-ribose] polymerase. (472 aa)
	D5GE54_TUBMM	Uncharacterized protein. (971 aa)
	D5GEK2_TUBMM	Zn(2)-C6 fungal-type domain-containing protein. (577 aa)
	D5GEZ6_TUBMM	Uncharacterized protein. (327 aa)
	D5GFM6_TUBMM	Uncharacterized protein. (906 aa)
	D5GFX0_TUBMM	Uncharacterized protein. (253 aa)
	D5GJR2_TUBMM	Uncharacterized protein. (509 aa)
	D5GLD7_TUBMM	Uncharacterized protein. (141 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G6P0_TUBMM	D5GAV9_TUBMM	D5G6P0	D5GAV9	Mitochondrial inner membrane protease subunit.	Poly [ADP-ribose] polymerase.	0.531
D5G6P0_TUBMM	D5GEK2_TUBMM	D5G6P0	D5GEK2	Mitochondrial inner membrane protease subunit.	Zn(2)-C6 fungal-type domain-containing protein.	0.443
D5G9D2_TUBMM	D5G9W3_TUBMM	D5G9D2	D5G9W3	Uncharacterized protein.	PCI domain-containing protein.	0.973
D5G9D2_TUBMM	D5GAC7_TUBMM	D5G9D2	D5GAC7	Uncharacterized protein.	Uncharacterized protein.	0.961
D5G9D2_TUBMM	D5GEZ6_TUBMM	D5G9D2	D5GEZ6	Uncharacterized protein.	Uncharacterized protein.	0.970
D5G9D2_TUBMM	D5GFX0_TUBMM	D5G9D2	D5GFX0	Uncharacterized protein.	Uncharacterized protein.	0.581
D5G9D2_TUBMM	D5GJR2_TUBMM	D5G9D2	D5GJR2	Uncharacterized protein.	Uncharacterized protein.	0.857
D5G9W3_TUBMM	D5G9D2_TUBMM	D5G9W3	D5G9D2	PCI domain-containing protein.	Uncharacterized protein.	0.973
D5G9W3_TUBMM	D5GAC7_TUBMM	D5G9W3	D5GAC7	PCI domain-containing protein.	Uncharacterized protein.	0.925
D5G9W3_TUBMM	D5GFX0_TUBMM	D5G9W3	D5GFX0	PCI domain-containing protein.	Uncharacterized protein.	0.722
D5G9W3_TUBMM	D5GJR2_TUBMM	D5G9W3	D5GJR2	PCI domain-containing protein.	Uncharacterized protein.	0.953
D5G9W3_TUBMM	D5GLD7_TUBMM	D5G9W3	D5GLD7	PCI domain-containing protein.	Uncharacterized protein.	0.563
D5GAC7_TUBMM	D5G9D2_TUBMM	D5GAC7	D5G9D2	Uncharacterized protein.	Uncharacterized protein.	0.961
D5GAC7_TUBMM	D5G9W3_TUBMM	D5GAC7	D5G9W3	Uncharacterized protein.	PCI domain-containing protein.	0.925
D5GAC7_TUBMM	D5GEZ6_TUBMM	D5GAC7	D5GEZ6	Uncharacterized protein.	Uncharacterized protein.	0.981
D5GAC7_TUBMM	D5GFX0_TUBMM	D5GAC7	D5GFX0	Uncharacterized protein.	Uncharacterized protein.	0.995
D5GAC7_TUBMM	D5GLD7_TUBMM	D5GAC7	D5GLD7	Uncharacterized protein.	Uncharacterized protein.	0.896
D5GAV9_TUBMM	D5G6P0_TUBMM	D5GAV9	D5G6P0	Poly [ADP-ribose] polymerase.	Mitochondrial inner membrane protease subunit.	0.531
D5GAV9_TUBMM	D5GE54_TUBMM	D5GAV9	D5GE54	Poly [ADP-ribose] polymerase.	Uncharacterized protein.	0.711
D5GAV9_TUBMM	D5GEK2_TUBMM	D5GAV9	D5GEK2	Poly [ADP-ribose] polymerase.	Zn(2)-C6 fungal-type domain-containing protein.	0.953