66 items (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G4C3_TUBMM	Uncharacterized protein. (898 aa)
	D5G4H5_TUBMM	Uncharacterized protein. (186 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (783 aa)
	D5G532_TUBMM	Uncharacterized protein. (812 aa)
	D5G5V3_TUBMM	SMC_N domain-containing protein. (1122 aa)
	D5G668_TUBMM	AAA_23 domain-containing protein. (1345 aa)
	D5G6N1_TUBMM	Uncharacterized protein. (591 aa)
	D5G6P1_TUBMM	Uncharacterized protein. (1023 aa)
	D5G6Z1_TUBMM	Uncharacterized protein. (1003 aa)
	D5G6Z2_TUBMM	Uncharacterized protein; Belongs to the RecA family. (265 aa)
	D5G7I5_TUBMM	RECA_2 domain-containing protein. (367 aa)
	D5G7T0_TUBMM	Uncharacterized protein. (826 aa)
	D5G8M3_TUBMM	Uncharacterized protein. (870 aa)
	D5G952_TUBMM	DNA_mis_repair domain-containing protein. (693 aa)
	D5G994_TUBMM	MutL_C domain-containing protein. (906 aa)
	D5G9E1_TUBMM	Uncharacterized protein. (1444 aa)
	D5G9G1_TUBMM	Uncharacterized protein. (1645 aa)
	D5GA35_TUBMM	DNA_MISMATCH_REPAIR_2 domain-containing protein. (871 aa)
	D5GA96_TUBMM	Uncharacterized protein. (1362 aa)
	D5GAB3_TUBMM	SAP domain-containing protein. (645 aa)
	D5GAK2_TUBMM	Uncharacterized protein. (1535 aa)
	D5GAX9_TUBMM	Uncharacterized protein. (822 aa)
	D5GAZ6_TUBMM	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (474 aa)
	D5GBC2_TUBMM	Structural maintenance of chromosomes protein. (1194 aa)
	D5GBT8_TUBMM	Helicase C-terminal domain-containing protein. (2127 aa)
	D5GD36_TUBMM	Uncharacterized protein. (414 aa)
	D5GDH9_TUBMM	Uncharacterized protein. (1069 aa)
	D5GDM7_TUBMM	Uncharacterized protein. (1062 aa)
	D5GDP2_TUBMM	Helicase ATP-binding domain-containing protein. (807 aa)
	D5GDT8_TUBMM	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (905 aa)
	D5GDV8_TUBMM	BRCT domain-containing protein. (755 aa)
	D5GED5_TUBMM	DBINO domain-containing protein. (759 aa)
	D5GED6_TUBMM	Helicase ATP-binding domain-containing protein. (123 aa)
	D5GED7_TUBMM	Helicase C-terminal domain-containing protein. (404 aa)
	D5GEI4_TUBMM	Uncharacterized protein. (1100 aa)
	D5GF28_TUBMM	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1612 aa)
	D5GF47_TUBMM	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (1032 aa)
	D5GFC0_TUBMM	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (527 aa)
	D5GFI1_TUBMM	DNA helicase; Belongs to the MCM family. (797 aa)
	D5GFR2_TUBMM	Uncharacterized protein. (759 aa)
	D5GFX9_TUBMM	Ku domain-containing protein. (665 aa)
	D5GGJ8_TUBMM	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (458 aa)
	D5GHI0_TUBMM	HD domain-containing protein. (214 aa)
	D5GHY6_TUBMM	AAA domain-containing protein. (422 aa)
	D5GIC7_TUBMM	DNA_mis_repair domain-containing protein. (608 aa)
	D5GIZ2_TUBMM	Uncharacterized protein. (1154 aa)
	D5GJ41_TUBMM	Uncharacterized protein. (1066 aa)
	D5GJI3_TUBMM	Uncharacterized protein. (1071 aa)
	D5GK35_TUBMM	RECA_2 domain-containing protein. (408 aa)
	D5GKH6_TUBMM	DNA_MISMATCH_REPAIR_2 domain-containing protein. (828 aa)
	D5GKU8_TUBMM	Uncharacterized protein. (1046 aa)
	D5GKW2_TUBMM	Replication factor C subunit 1. (1025 aa)
	D5GKW9_TUBMM	Uncharacterized protein. (81 aa)
	D5GKX0_TUBMM	Uncharacterized protein; Belongs to the RecA family. (217 aa)
	D5GL82_TUBMM	DNA helicase; Belongs to the MCM family. (888 aa)
	D5GLN0_TUBMM	Uncharacterized protein. (590 aa)
	D5GM69_TUBMM	Uncharacterized protein. (874 aa)
	D5GMA7_TUBMM	Uncharacterized protein. (1105 aa)
	D5GME3_TUBMM	Helicase ATP-binding domain-containing protein. (748 aa)
	D5GMV9_TUBMM	Uncharacterized protein. (1022 aa)
	D5GMZ1_TUBMM	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1161 aa)
	D5GNB7_TUBMM	Uncharacterized protein. (823 aa)
	D5GNF3_TUBMM	Uncharacterized protein. (1031 aa)
	D5GP31_TUBMM	AAA domain-containing protein. (711 aa)
	D5GPG9_TUBMM	Uncharacterized protein. (1480 aa)
	D5GPJ9_TUBMM	DNA_MISMATCH_REPAIR_2 domain-containing protein. (781 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4C3_TUBMM	D5G532_TUBMM	D5G4C3	D5G532	Uncharacterized protein.	Uncharacterized protein.	0.521
D5G4C3_TUBMM	D5G5V3_TUBMM	D5G4C3	D5G5V3	Uncharacterized protein.	SMC_N domain-containing protein.	0.619
D5G4C3_TUBMM	D5G668_TUBMM	D5G4C3	D5G668	Uncharacterized protein.	AAA_23 domain-containing protein.	0.800
D5G4C3_TUBMM	D5G6P1_TUBMM	D5G4C3	D5G6P1	Uncharacterized protein.	Uncharacterized protein.	0.495
D5G4C3_TUBMM	D5G6Z1_TUBMM	D5G4C3	D5G6Z1	Uncharacterized protein.	Uncharacterized protein.	0.902
D5G4C3_TUBMM	D5G6Z2_TUBMM	D5G4C3	D5G6Z2	Uncharacterized protein.	Uncharacterized protein; Belongs to the RecA family.	0.947
D5G4C3_TUBMM	D5G7I5_TUBMM	D5G4C3	D5G7I5	Uncharacterized protein.	RECA_2 domain-containing protein.	0.735
D5G4C3_TUBMM	D5G8M3_TUBMM	D5G4C3	D5G8M3	Uncharacterized protein.	Uncharacterized protein.	0.521
D5G4C3_TUBMM	D5G952_TUBMM	D5G4C3	D5G952	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.898
D5G4C3_TUBMM	D5G994_TUBMM	D5G4C3	D5G994	Uncharacterized protein.	MutL_C domain-containing protein.	0.512
D5G4C3_TUBMM	D5GA35_TUBMM	D5G4C3	D5GA35	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.461
D5G4C3_TUBMM	D5GAB3_TUBMM	D5G4C3	D5GAB3	Uncharacterized protein.	SAP domain-containing protein.	0.804
D5G4C3_TUBMM	D5GAX9_TUBMM	D5G4C3	D5GAX9	Uncharacterized protein.	Uncharacterized protein.	0.637
D5G4C3_TUBMM	D5GDP2_TUBMM	D5G4C3	D5GDP2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.502
D5G4C3_TUBMM	D5GDT8_TUBMM	D5G4C3	D5GDT8	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.644
D5G4C3_TUBMM	D5GDV8_TUBMM	D5G4C3	D5GDV8	Uncharacterized protein.	BRCT domain-containing protein.	0.549
D5G4C3_TUBMM	D5GF28_TUBMM	D5G4C3	D5GF28	Uncharacterized protein.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.591
D5G4C3_TUBMM	D5GF47_TUBMM	D5G4C3	D5GF47	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.793
D5G4C3_TUBMM	D5GFX9_TUBMM	D5G4C3	D5GFX9	Uncharacterized protein.	Ku domain-containing protein.	0.620
D5G4C3_TUBMM	D5GHI0_TUBMM	D5G4C3	D5GHI0	Uncharacterized protein.	HD domain-containing protein.	0.578