8 items (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G513_TUBMM	Uncharacterized protein. (519 aa)
	D5G7T2_TUBMM	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	D5GFV6_TUBMM	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (285 aa)
	D5GFZ2_TUBMM	UmuC domain-containing protein. (627 aa)
	D5GG66_TUBMM	Uncharacterized protein. (265 aa)
	D5GJ32_TUBMM	Vezatin domain-containing protein. (620 aa)
	D5GK44_TUBMM	XPA_C domain-containing protein. (346 aa)
	D5GP79_TUBMM	E3 ubiquitin-protein ligase. (739 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G513_TUBMM	D5GFZ2_TUBMM	D5G513	D5GFZ2	Uncharacterized protein.	UmuC domain-containing protein.	0.556
D5G7T2_TUBMM	D5GFV6_TUBMM	D5G7T2	D5GFV6	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.695
D5G7T2_TUBMM	D5GJ32_TUBMM	D5G7T2	D5GJ32	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Vezatin domain-containing protein.	0.695
D5G7T2_TUBMM	D5GK44_TUBMM	D5G7T2	D5GK44	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	XPA_C domain-containing protein.	0.696
D5G7T2_TUBMM	D5GP79_TUBMM	D5G7T2	D5GP79	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	E3 ubiquitin-protein ligase.	0.469
D5GFV6_TUBMM	D5G7T2_TUBMM	D5GFV6	D5G7T2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.695
D5GFV6_TUBMM	D5GFZ2_TUBMM	D5GFV6	D5GFZ2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	UmuC domain-containing protein.	0.999
D5GFV6_TUBMM	D5GJ32_TUBMM	D5GFV6	D5GJ32	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Vezatin domain-containing protein.	0.650
D5GFV6_TUBMM	D5GK44_TUBMM	D5GFV6	D5GK44	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	XPA_C domain-containing protein.	0.432
D5GFZ2_TUBMM	D5G513_TUBMM	D5GFZ2	D5G513	UmuC domain-containing protein.	Uncharacterized protein.	0.556
D5GFZ2_TUBMM	D5GFV6_TUBMM	D5GFZ2	D5GFV6	UmuC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
D5GFZ2_TUBMM	D5GJ32_TUBMM	D5GFZ2	D5GJ32	UmuC domain-containing protein.	Vezatin domain-containing protein.	0.999
D5GFZ2_TUBMM	D5GK44_TUBMM	D5GFZ2	D5GK44	UmuC domain-containing protein.	XPA_C domain-containing protein.	0.730
D5GJ32_TUBMM	D5G7T2_TUBMM	D5GJ32	D5G7T2	Vezatin domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.695
D5GJ32_TUBMM	D5GFV6_TUBMM	D5GJ32	D5GFV6	Vezatin domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.650
D5GJ32_TUBMM	D5GFZ2_TUBMM	D5GJ32	D5GFZ2	Vezatin domain-containing protein.	UmuC domain-containing protein.	0.999
D5GJ32_TUBMM	D5GK44_TUBMM	D5GJ32	D5GK44	Vezatin domain-containing protein.	XPA_C domain-containing protein.	0.432
D5GK44_TUBMM	D5G7T2_TUBMM	D5GK44	D5G7T2	XPA_C domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.696
D5GK44_TUBMM	D5GFV6_TUBMM	D5GK44	D5GFV6	XPA_C domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.432
D5GK44_TUBMM	D5GFZ2_TUBMM	D5GK44	D5GFZ2	XPA_C domain-containing protein.	UmuC domain-containing protein.	0.730