(15 nodes) Proteasomal ubiquitin-independent protein catabolic process network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GBB6_TUBMM	Proteasome subunit alpha type. (245 aa)
	D5G9A2_TUBMM	Uncharacterized protein. (311 aa)
	D5GBG2_TUBMM	Proteasome subunit beta; Belongs to the peptidase T1B family. (260 aa)
	D5GCA7_TUBMM	Uncharacterized protein. (1841 aa)
	D5GFM4_TUBMM	Proteasome subunit alpha type. (249 aa)
	D5GHR2_TUBMM	Pr_beta_C domain-containing protein. (278 aa)
	D5GHS3_TUBMM	Proteasome subunit beta. (175 aa)
	D5GJ17_TUBMM	Proteasome subunit alpha type. (256 aa)
	D5GL27_TUBMM	Proteasome subunit alpha type. (247 aa)
	D5GLT6_TUBMM	Proteasome subunit alpha type. (259 aa)
	D5GP51_TUBMM	Proteasome subunit beta; Belongs to the peptidase T1B family. (257 aa)
	D5GPN5_TUBMM	Uncharacterized protein. (593 aa)
	D5G538_TUBMM	Proteasome subunit beta. (282 aa)
	D5G6Q0_TUBMM	Proteasome subunit alpha type. (285 aa)
	D5G866_TUBMM	Uncharacterized protein. (229 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G538_TUBMM	D5G6Q0_TUBMM	D5G538	D5G6Q0	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
D5G538_TUBMM	D5G866_TUBMM	D5G538	D5G866	Proteasome subunit beta.	Uncharacterized protein.	0.999
D5G538_TUBMM	D5G9A2_TUBMM	D5G538	D5G9A2	Proteasome subunit beta.	Uncharacterized protein.	0.977
D5G538_TUBMM	D5GBB6_TUBMM	D5G538	D5GBB6	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
D5G538_TUBMM	D5GBG2_TUBMM	D5G538	D5GBG2	Proteasome subunit beta.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
D5G538_TUBMM	D5GCA7_TUBMM	D5G538	D5GCA7	Proteasome subunit beta.	Uncharacterized protein.	0.969
D5G538_TUBMM	D5GFM4_TUBMM	D5G538	D5GFM4	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
D5G538_TUBMM	D5GHR2_TUBMM	D5G538	D5GHR2	Proteasome subunit beta.	Pr_beta_C domain-containing protein.	0.999
D5G538_TUBMM	D5GHS3_TUBMM	D5G538	D5GHS3	Proteasome subunit beta.	Proteasome subunit beta.	0.999
D5G538_TUBMM	D5GJ17_TUBMM	D5G538	D5GJ17	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
D5G538_TUBMM	D5GL27_TUBMM	D5G538	D5GL27	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
D5G538_TUBMM	D5GLT6_TUBMM	D5G538	D5GLT6	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
D5G538_TUBMM	D5GP51_TUBMM	D5G538	D5GP51	Proteasome subunit beta.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
D5G538_TUBMM	D5GPN5_TUBMM	D5G538	D5GPN5	Proteasome subunit beta.	Uncharacterized protein.	0.985
D5G6Q0_TUBMM	D5G538_TUBMM	D5G6Q0	D5G538	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
D5G6Q0_TUBMM	D5G866_TUBMM	D5G6Q0	D5G866	Proteasome subunit alpha type.	Uncharacterized protein.	0.999
D5G6Q0_TUBMM	D5G9A2_TUBMM	D5G6Q0	D5G9A2	Proteasome subunit alpha type.	Uncharacterized protein.	0.990
D5G6Q0_TUBMM	D5GBB6_TUBMM	D5G6Q0	D5GBB6	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
D5G6Q0_TUBMM	D5GBG2_TUBMM	D5G6Q0	D5GBG2	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
D5G6Q0_TUBMM	D5GCA7_TUBMM	D5G6Q0	D5GCA7	Proteasome subunit alpha type.	Uncharacterized protein.	0.986