(15 nodes) SCF ubiquitin ligase complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GPU3_TUBMM	Uncharacterized protein. (1077 aa)
	D5G4D3_TUBMM	Uncharacterized protein. (260 aa)
	D5G4G3_TUBMM	F-box domain-containing protein. (613 aa)
	D5G6M0_TUBMM	CULLIN_2 domain-containing protein; Belongs to the cullin family. (768 aa)
	D5G6T7_TUBMM	Uncharacterized protein. (622 aa)
	D5G7A7_TUBMM	RING-type domain-containing protein. (112 aa)
	D5G8J8_TUBMM	Uncharacterized protein. (542 aa)
	D5G9G0_TUBMM	F-box domain-containing protein. (605 aa)
	D5GAF0_TUBMM	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (236 aa)
	D5GBB1_TUBMM	Uncharacterized protein. (717 aa)
	D5GBL0_TUBMM	Uncharacterized protein. (530 aa)
	D5GFF4_TUBMM	F-box domain-containing protein. (517 aa)
	D5GG65_TUBMM	Uncharacterized protein. (907 aa)
	D5GGD9_TUBMM	WD_REPEATS_REGION domain-containing protein. (732 aa)
	D5GIC9_TUBMM	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (112 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4G3_TUBMM	D5G6M0_TUBMM	D5G4G3	D5G6M0	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.605
D5G4G3_TUBMM	D5G7A7_TUBMM	D5G4G3	D5G7A7	F-box domain-containing protein.	RING-type domain-containing protein.	0.625
D5G6M0_TUBMM	D5G4G3_TUBMM	D5G6M0	D5G4G3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.605
D5G6M0_TUBMM	D5G6T7_TUBMM	D5G6M0	D5G6T7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.822
D5G6M0_TUBMM	D5G7A7_TUBMM	D5G6M0	D5G7A7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.997
D5G6M0_TUBMM	D5G9G0_TUBMM	D5G6M0	D5G9G0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.938
D5G6M0_TUBMM	D5GAF0_TUBMM	D5G6M0	D5GAF0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.909
D5G6M0_TUBMM	D5GBB1_TUBMM	D5G6M0	D5GBB1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.989
D5G6M0_TUBMM	D5GBL0_TUBMM	D5G6M0	D5GBL0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.860
D5G6M0_TUBMM	D5GFF4_TUBMM	D5G6M0	D5GFF4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.869
D5G6M0_TUBMM	D5GG65_TUBMM	D5G6M0	D5GG65	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.850
D5G6M0_TUBMM	D5GGD9_TUBMM	D5G6M0	D5GGD9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.860
D5G6M0_TUBMM	D5GIC9_TUBMM	D5G6M0	D5GIC9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.747
D5G6M0_TUBMM	D5GPU3_TUBMM	D5G6M0	D5GPU3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.922
D5G6T7_TUBMM	D5G6M0_TUBMM	D5G6T7	D5G6M0	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.822
D5G6T7_TUBMM	D5G7A7_TUBMM	D5G6T7	D5G7A7	Uncharacterized protein.	RING-type domain-containing protein.	0.951
D5G6T7_TUBMM	D5GAF0_TUBMM	D5G6T7	D5GAF0	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.699
D5G6T7_TUBMM	D5GPU3_TUBMM	D5G6T7	D5GPU3	Uncharacterized protein.	Uncharacterized protein.	0.907
D5G7A7_TUBMM	D5G4G3_TUBMM	D5G7A7	D5G4G3	RING-type domain-containing protein.	F-box domain-containing protein.	0.625
D5G7A7_TUBMM	D5G6M0_TUBMM	D5G7A7	D5G6M0	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.997