(48 nodes) rRNA binding network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GMA2_TUBMM	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (195 aa)
	D5GM98_TUBMM	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (544 aa)
	D5GM42_TUBMM	Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family. (224 aa)
	D5GLV6_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	D5GLE9_TUBMM	Uncharacterized protein. (116 aa)
	D5GKY0_TUBMM	Uncharacterized protein. (282 aa)
	D5GME7_TUBMM	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	D5G5A7_TUBMM	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	D5G4X7_TUBMM	Ribosomal_L18_c domain-containing protein. (376 aa)
	D5GK76_TUBMM	S4 RNA-binding domain-containing protein. (184 aa)
	D5GK13_TUBMM	Uncharacterized protein. (194 aa)
	D5GJ81_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (189 aa)
	D5GIN4_TUBMM	Uncharacterized protein. (217 aa)
	D5GH82_TUBMM	S4 RNA-binding domain-containing protein. (366 aa)
	D5GGQ9_TUBMM	HRDC domain-containing protein. (838 aa)
	D5GGQ2_TUBMM	Uncharacterized protein. (730 aa)
	D5GG61_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	D5GE21_TUBMM	Uncharacterized protein. (282 aa)
	D5GDC3_TUBMM	Uncharacterized protein. (141 aa)
	D5GCV2_TUBMM	Brix domain-containing protein. (297 aa)
	D5GCN4_TUBMM	Uncharacterized protein. (156 aa)
	D5GCH8_TUBMM	Uncharacterized protein. (250 aa)
	D5GBN6_TUBMM	Uncharacterized protein. (202 aa)
	D5GBH6_TUBMM	Uncharacterized protein. (114 aa)
	D5GAC1_TUBMM	Ribosomal_L2_C domain-containing protein. (306 aa)
	D5G8A4_TUBMM	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (423 aa)
	D5G755_TUBMM	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (222 aa)
	D5G6S1_TUBMM	Uncharacterized protein. (1070 aa)
	D5G672_TUBMM	Uncharacterized protein. (772 aa)
	D5G5F2_TUBMM	Uncharacterized protein. (216 aa)
	D5GJQ5_TUBMM	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (236 aa)
	D5GJJ4_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (125 aa)
	D5GPE7_TUBMM	Uncharacterized protein. (314 aa)
	D5GNZ9_TUBMM	Ribosomal_L23eN domain-containing protein. (155 aa)
	D5GNX1_TUBMM	Brix domain-containing protein. (319 aa)
	D5GNT2_TUBMM	Ribosomal_S7 domain-containing protein. (344 aa)
	D5GNL2_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (154 aa)
	D5GNG9_TUBMM	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	D5GNC4_TUBMM	Uncharacterized protein. (214 aa)
	D5GNA1_TUBMM	Uncharacterized protein. (129 aa)
	D5GNA0_TUBMM	Uncharacterized protein. (165 aa)
	D5GN14_TUBMM	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	D5GMY9_TUBMM	Brix domain-containing protein. (473 aa)
	D5GMR6_TUBMM	S4 RNA-binding domain-containing protein. (342 aa)
	D5GMR3_TUBMM	Uncharacterized protein. (213 aa)
	D5GME6_TUBMM	Uncharacterized protein. (257 aa)
	D5GMB2_TUBMM	Uncharacterized protein. (1787 aa)
	D5GMA8_TUBMM	Brix domain-containing protein. (308 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4X7_TUBMM	D5G5A7_TUBMM	D5G4X7	D5G5A7	Ribosomal_L18_c domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
D5G4X7_TUBMM	D5G5F2_TUBMM	D5G4X7	D5G5F2	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G6S1_TUBMM	D5G4X7	D5G6S1	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.925
D5G4X7_TUBMM	D5G755_TUBMM	D5G4X7	D5G755	Ribosomal_L18_c domain-containing protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.867
D5G4X7_TUBMM	D5G8A4_TUBMM	D5G4X7	D5G8A4	Ribosomal_L18_c domain-containing protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.988
D5G4X7_TUBMM	D5GAC1_TUBMM	D5G4X7	D5GAC1	Ribosomal_L18_c domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.999
D5G4X7_TUBMM	D5GBH6_TUBMM	D5G4X7	D5GBH6	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.987
D5G4X7_TUBMM	D5GCN4_TUBMM	D5G4X7	D5GCN4	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.958
D5G4X7_TUBMM	D5GE21_TUBMM	D5G4X7	D5GE21	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.966
D5G4X7_TUBMM	D5GG61_TUBMM	D5G4X7	D5GG61	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
D5G4X7_TUBMM	D5GGQ9_TUBMM	D5G4X7	D5GGQ9	Ribosomal_L18_c domain-containing protein.	HRDC domain-containing protein.	0.688
D5G4X7_TUBMM	D5GH82_TUBMM	D5G4X7	D5GH82	Ribosomal_L18_c domain-containing protein.	S4 RNA-binding domain-containing protein.	0.983
D5G4X7_TUBMM	D5GIN4_TUBMM	D5G4X7	D5GIN4	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.981
D5G4X7_TUBMM	D5GJ81_TUBMM	D5G4X7	D5GJ81	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.999
D5G4X7_TUBMM	D5GJJ4_TUBMM	D5G4X7	D5GJJ4	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.989
D5G4X7_TUBMM	D5GJQ5_TUBMM	D5G4X7	D5GJQ5	Ribosomal_L18_c domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.986
D5G4X7_TUBMM	D5GK13_TUBMM	D5G4X7	D5GK13	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5GK76_TUBMM	D5G4X7	D5GK76	Ribosomal_L18_c domain-containing protein.	S4 RNA-binding domain-containing protein.	0.958
D5G4X7_TUBMM	D5GLE9_TUBMM	D5G4X7	D5GLE9	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5GLV6_TUBMM	D5G4X7	D5GLV6	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999