(47 nodes) Cytosolic large ribosomal subunit network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GBR0_TUBMM	Uncharacterized protein. (189 aa)
	D5GQ60_TUBMM	Uncharacterized protein. (135 aa)
	D5GPR9_TUBMM	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (78 aa)
	D5GP39_TUBMM	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (218 aa)
	D5GP27_TUBMM	Ribosomal_L16 domain-containing protein. (220 aa)
	D5GNZ9_TUBMM	Ribosomal_L23eN domain-containing protein. (155 aa)
	D5GNA1_TUBMM	Uncharacterized protein. (129 aa)
	D5GNA0_TUBMM	Uncharacterized protein. (165 aa)
	D5GN28_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (640 aa)
	D5GN14_TUBMM	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	D5GMA1_TUBMM	Uncharacterized protein. (137 aa)
	D5GM24_TUBMM	Ribosomal_L7Ae domain-containing protein. (323 aa)
	D5GKY3_TUBMM	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
	D5GKQ8_TUBMM	Uncharacterized protein. (126 aa)
	D5GJ81_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (189 aa)
	D5GIV4_TUBMM	Uncharacterized protein. (108 aa)
	D5GI48_TUBMM	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (133 aa)
	D5GI14_TUBMM	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (111 aa)
	D5GHR0_TUBMM	Ribosomal_L7Ae domain-containing protein. (198 aa)
	D5GG61_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	D5GET6_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (199 aa)
	D5GED2_TUBMM	KOW domain-containing protein. (136 aa)
	D5GEA8_TUBMM	Ribosomal_L16 domain-containing protein. (219 aa)
	D5GE72_TUBMM	Uncharacterized protein. (131 aa)
	D5GDV3_TUBMM	Uncharacterized protein. (187 aa)
	D5GDH1_TUBMM	Uncharacterized protein. (194 aa)
	D5GBH6_TUBMM	Uncharacterized protein. (114 aa)
	D5GAC1_TUBMM	Ribosomal_L2_C domain-containing protein. (306 aa)
	D5GA84_TUBMM	Ribosomal_L28e domain-containing protein. (125 aa)
	D5G9W2_TUBMM	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (148 aa)
	D5G9V5_TUBMM	Uncharacterized protein. (122 aa)
	D5G9H4_TUBMM	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (198 aa)
	D5G9G5_TUBMM	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (104 aa)
	D5G9C7_TUBMM	Uncharacterized protein. (249 aa)
	D5G989_TUBMM	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (203 aa)
	D5G8F3_TUBMM	Uncharacterized protein. (114 aa)
	D5G892_TUBMM	Ribos_L4_asso_C domain-containing protein. (413 aa)
	D5G871_TUBMM	Uncharacterized protein. (72 aa)
	D5G870_TUBMM	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (128 aa)
	D5G833_TUBMM	Uncharacterized protein. (214 aa)
	D5G7T8_TUBMM	Uncharacterized protein. (159 aa)
	D5G7B5_TUBMM	Uncharacterized protein. (321 aa)
	D5G788_TUBMM	Uncharacterized protein. (92 aa)
	D5G744_TUBMM	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	D5G5W0_TUBMM	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (146 aa)
	D5G5E4_TUBMM	Uncharacterized protein. (131 aa)
	D5G4X7_TUBMM	Ribosomal_L18_c domain-containing protein. (376 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4X7_TUBMM	D5G5E4_TUBMM	D5G4X7	D5G5E4	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G5W0_TUBMM	D5G4X7	D5G5W0	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
D5G4X7_TUBMM	D5G744_TUBMM	D5G4X7	D5G744	Ribosomal_L18_c domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
D5G4X7_TUBMM	D5G788_TUBMM	D5G4X7	D5G788	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G7B5_TUBMM	D5G4X7	D5G7B5	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G7T8_TUBMM	D5G4X7	D5G7T8	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G833_TUBMM	D5G4X7	D5G833	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G870_TUBMM	D5G4X7	D5G870	Ribosomal_L18_c domain-containing protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.977
D5G4X7_TUBMM	D5G871_TUBMM	D5G4X7	D5G871	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.977
D5G4X7_TUBMM	D5G892_TUBMM	D5G4X7	D5G892	Ribosomal_L18_c domain-containing protein.	Ribos_L4_asso_C domain-containing protein.	0.999
D5G4X7_TUBMM	D5G8F3_TUBMM	D5G4X7	D5G8F3	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G989_TUBMM	D5G4X7	D5G989	Ribosomal_L18_c domain-containing protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
D5G4X7_TUBMM	D5G9C7_TUBMM	D5G4X7	D5G9C7	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G9G5_TUBMM	D5G4X7	D5G9G5	Ribosomal_L18_c domain-containing protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
D5G4X7_TUBMM	D5G9H4_TUBMM	D5G4X7	D5G9H4	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.999
D5G4X7_TUBMM	D5G9V5_TUBMM	D5G4X7	D5G9V5	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
D5G4X7_TUBMM	D5G9W2_TUBMM	D5G4X7	D5G9W2	Ribosomal_L18_c domain-containing protein.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
D5G4X7_TUBMM	D5GA84_TUBMM	D5G4X7	D5GA84	Ribosomal_L18_c domain-containing protein.	Ribosomal_L28e domain-containing protein.	0.999
D5G4X7_TUBMM	D5GAC1_TUBMM	D5G4X7	D5GAC1	Ribosomal_L18_c domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.999
D5G4X7_TUBMM	D5GBH6_TUBMM	D5G4X7	D5GBH6	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.987