(88 nodes) Regulation of signaling network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GJB5_TUBMM	Uncharacterized protein. (285 aa)
	D5GJB2_TUBMM	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (260 aa)
	D5GJ84_TUBMM	SEC7 domain-containing protein. (1841 aa)
	D5GJ75_TUBMM	Uncharacterized protein. (407 aa)
	D5GJ33_TUBMM	Rab-GAP TBC domain-containing protein. (380 aa)
	D5GIH8_TUBMM	Uncharacterized protein. (223 aa)
	D5GID5_TUBMM	Serine/threonine-protein kinase. (631 aa)
	D5GHM7_TUBMM	Uncharacterized protein. (654 aa)
	D5GH58_TUBMM	CNH domain-containing protein. (971 aa)
	D5GH28_TUBMM	Uncharacterized protein. (611 aa)
	D5GH26_TUBMM	Uncharacterized protein. (327 aa)
	D5GGZ7_TUBMM	Uncharacterized protein. (392 aa)
	D5GGS8_TUBMM	SEC7 domain-containing protein. (963 aa)
	D5GGR0_TUBMM	Ras-GAP domain-containing protein. (782 aa)
	D5GL95_TUBMM	Uncharacterized protein. (1260 aa)
	D5GG76_TUBMM	WD_REPEATS_REGION domain-containing protein. (1073 aa)
	D5G456_TUBMM	Uncharacterized protein. (1083 aa)
	D5G446_TUBMM	Uncharacterized protein. (297 aa)
	D5G3U5_TUBMM	Methyltranfer_dom domain-containing protein. (537 aa)
	D5GLI2_TUBMM	Uncharacterized protein. (903 aa)
	D5GLL6_TUBMM	Uncharacterized protein. (515 aa)
	D5GLR1_TUBMM	Uncharacterized protein. (223 aa)
	D5GM67_TUBMM	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (427 aa)
	D5GMN9_TUBMM	Uncharacterized protein. (508 aa)
	D5GN68_TUBMM	TYR_PHOSPHATASE_2 domain-containing protein. (618 aa)
	D5GN84_TUBMM	Uncharacterized protein. (379 aa)
	D5GND7_TUBMM	Phosphatase tensin-type domain-containing protein. (369 aa)
	D5GNE8_TUBMM	UBIQUITIN_CONJUGAT_2 domain-containing protein. (1134 aa)
	D5GNL8_TUBMM	Uncharacterized protein. (350 aa)
	D5GP07_TUBMM	Uncharacterized protein. (549 aa)
	D5GP73_TUBMM	CID domain-containing protein. (539 aa)
	D5GQ52_TUBMM	Uncharacterized protein. (943 aa)
	D5GLI1_TUBMM	Uncharacterized protein. (343 aa)
	D5GK55_TUBMM	Uncharacterized protein. (956 aa)
	D5GJF0_TUBMM	Senescence domain-containing protein. (557 aa)
	D5GA75_TUBMM	Uncharacterized protein. (175 aa)
	D5GAD6_TUBMM	Rap-GAP domain-containing protein. (1557 aa)
	D5GA07_TUBMM	TMF_TATA_bd domain-containing protein. (746 aa)
	D5GKL2_TUBMM	SEC7 domain-containing protein. (1486 aa)
	D5GL81_TUBMM	FNIP_N domain-containing protein. (1134 aa)
	D5GLD1_TUBMM	PPM-type phosphatase domain-containing protein. (447 aa)
	D5GLB0_TUBMM	Phosducin domain-containing protein. (280 aa)
	D5GDW6_TUBMM	UDENN FLCN/SMCR8-type domain-containing protein. (410 aa)
	D5GE87_TUBMM	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (336 aa)
	D5GEE3_TUBMM	Uncharacterized protein. (1628 aa)
	D5GEN0_TUBMM	F-box domain-containing protein. (575 aa)
	D5GEU1_TUBMM	Uncharacterized protein. (144 aa)
	D5GEV6_TUBMM	OTU domain-containing protein. (422 aa)
	D5GEZ9_TUBMM	Uncharacterized protein. (190 aa)
	D5GF38_TUBMM	Uncharacterized protein. (219 aa)
	D5GFE8_TUBMM	Uncharacterized protein. (961 aa)
	D5GG46_TUBMM	Uncharacterized protein. (909 aa)
	D5GG53_TUBMM	Uncharacterized protein; Belongs to the BI1 family. (330 aa)
	D5G959_TUBMM	Uncharacterized protein. (1161 aa)
	D5G8V3_TUBMM	RING-type domain-containing protein. (70 aa)
	D5G8R8_TUBMM	RIC1 domain-containing protein. (1105 aa)
	D5G8M4_TUBMM	Uncharacterized protein. (684 aa)
	D5G8C4_TUBMM	Uncharacterized protein. (995 aa)
	D5G7U6_TUBMM	Uncharacterized protein. (397 aa)
	D5G7T3_TUBMM	Uncharacterized protein. (1307 aa)
	D5G7D9_TUBMM	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (125 aa)
	D5G719_TUBMM	UBIQUITIN_CONJUGAT_2 domain-containing protein. (1201 aa)
	D5G6U0_TUBMM	Uncharacterized protein. (1042 aa)
	D5G615_TUBMM	Uncharacterized protein. (120 aa)
	D5G5Y2_TUBMM	Uncharacterized protein. (331 aa)
	D5G5X7_TUBMM	Uncharacterized protein. (1184 aa)
	D5G5U6_TUBMM	Uncharacterized protein. (768 aa)
	D5GB21_TUBMM	Uncharacterized protein. (776 aa)
	D5GB54_TUBMM	Uncharacterized protein. (301 aa)
	D5GB67_TUBMM	Uncharacterized protein. (128 aa)
	D5GBF5_TUBMM	USP domain-containing protein; Belongs to the peptidase C19 family. (1168 aa)
	D5GBI4_TUBMM	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (390 aa)
	D5GBM4_TUBMM	Zinc_ribbon_16 domain-containing protein. (981 aa)
	D5GBX6_TUBMM	Uncharacterized protein. (192 aa)
	D5GCM4_TUBMM	FHA domain-containing protein. (748 aa)
	D5GCP9_TUBMM	Uncharacterized protein. (349 aa)
	D5GCS1_TUBMM	Uncharacterized protein. (1953 aa)
	D5GCY9_TUBMM	Fe2OG dioxygenase domain-containing protein. (661 aa)
	D5GD74_TUBMM	Uncharacterized protein. (1003 aa)
	D5GDI2_TUBMM	WD_REPEATS_REGION domain-containing protein. (304 aa)
	D5GDL3_TUBMM	Uncharacterized protein. (857 aa)
	D5G5S2_TUBMM	Uncharacterized protein. (1221 aa)
	D5G4P1_TUBMM	WD_REPEATS_REGION domain-containing protein. (328 aa)
	D5G4H0_TUBMM	Uncharacterized protein. (1580 aa)
	D5G4G3_TUBMM	F-box domain-containing protein. (613 aa)
	D5G9X0_TUBMM	Uncharacterized protein. (450 aa)
	D5G9L3_TUBMM	Uncharacterized protein. (306 aa)
	D5G9F0_TUBMM	Uncharacterized protein. (687 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G3U5_TUBMM	D5G7T3_TUBMM	D5G3U5	D5G7T3	Methyltranfer_dom domain-containing protein.	Uncharacterized protein.	0.505
D5G3U5_TUBMM	D5GBM4_TUBMM	D5G3U5	D5GBM4	Methyltranfer_dom domain-containing protein.	Zinc_ribbon_16 domain-containing protein.	0.646
D5G3U5_TUBMM	D5GG76_TUBMM	D5G3U5	D5GG76	Methyltranfer_dom domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.509
D5G446_TUBMM	D5G719_TUBMM	D5G446	D5G719	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.705
D5G446_TUBMM	D5G959_TUBMM	D5G446	D5G959	Uncharacterized protein.	Uncharacterized protein.	0.438
D5G446_TUBMM	D5GEU1_TUBMM	D5G446	D5GEU1	Uncharacterized protein.	Uncharacterized protein.	0.422
D5G446_TUBMM	D5GMN9_TUBMM	D5G446	D5GMN9	Uncharacterized protein.	Uncharacterized protein.	0.402
D5G446_TUBMM	D5GND7_TUBMM	D5G446	D5GND7	Uncharacterized protein.	Phosphatase tensin-type domain-containing protein.	0.518
D5G4H0_TUBMM	D5G5X7_TUBMM	D5G4H0	D5G5X7	Uncharacterized protein.	Uncharacterized protein.	0.728
D5G4H0_TUBMM	D5G6U0_TUBMM	D5G4H0	D5G6U0	Uncharacterized protein.	Uncharacterized protein.	0.459
D5G5S2_TUBMM	D5GE87_TUBMM	D5G5S2	D5GE87	Uncharacterized protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.403
D5G5S2_TUBMM	D5GHM7_TUBMM	D5G5S2	D5GHM7	Uncharacterized protein.	Uncharacterized protein.	0.503
D5G5X7_TUBMM	D5G4H0_TUBMM	D5G5X7	D5G4H0	Uncharacterized protein.	Uncharacterized protein.	0.728
D5G5X7_TUBMM	D5G6U0_TUBMM	D5G5X7	D5G6U0	Uncharacterized protein.	Uncharacterized protein.	0.683
D5G615_TUBMM	D5G7T3_TUBMM	D5G615	D5G7T3	Uncharacterized protein.	Uncharacterized protein.	0.951
D5G615_TUBMM	D5G8C4_TUBMM	D5G615	D5G8C4	Uncharacterized protein.	Uncharacterized protein.	0.612
D5G615_TUBMM	D5G9F0_TUBMM	D5G615	D5G9F0	Uncharacterized protein.	Uncharacterized protein.	0.957
D5G615_TUBMM	D5GB54_TUBMM	D5G615	D5GB54	Uncharacterized protein.	Uncharacterized protein.	0.816
D5G615_TUBMM	D5GBI4_TUBMM	D5G615	D5GBI4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.819
D5G615_TUBMM	D5GBM4_TUBMM	D5G615	D5GBM4	Uncharacterized protein.	Zinc_ribbon_16 domain-containing protein.	0.944