(6 nodes) Rpd3L complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G810_TUBMM	Chromatin modification-related protein. (788 aa)
	D5GLT2_TUBMM	Hist_deacetyl domain-containing protein. (642 aa)
	D5GDK0_TUBMM	Uncharacterized protein. (597 aa)
	D5GAQ4_TUBMM	RXT2_N domain-containing protein. (499 aa)
	D5G884_TUBMM	Uncharacterized protein. (321 aa)
	D5G4Q7_TUBMM	PHD-type domain-containing protein. (732 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4Q7_TUBMM	D5GAQ4_TUBMM	D5G4Q7	D5GAQ4	PHD-type domain-containing protein.	RXT2_N domain-containing protein.	0.853
D5G4Q7_TUBMM	D5GDK0_TUBMM	D5G4Q7	D5GDK0	PHD-type domain-containing protein.	Uncharacterized protein.	0.794
D5G4Q7_TUBMM	D5GLT2_TUBMM	D5G4Q7	D5GLT2	PHD-type domain-containing protein.	Hist_deacetyl domain-containing protein.	0.847
D5G810_TUBMM	D5GLT2_TUBMM	D5G810	D5GLT2	Chromatin modification-related protein.	Hist_deacetyl domain-containing protein.	0.447
D5GAQ4_TUBMM	D5G4Q7_TUBMM	D5GAQ4	D5G4Q7	RXT2_N domain-containing protein.	PHD-type domain-containing protein.	0.853
D5GAQ4_TUBMM	D5GDK0_TUBMM	D5GAQ4	D5GDK0	RXT2_N domain-containing protein.	Uncharacterized protein.	0.788
D5GAQ4_TUBMM	D5GLT2_TUBMM	D5GAQ4	D5GLT2	RXT2_N domain-containing protein.	Hist_deacetyl domain-containing protein.	0.846
D5GDK0_TUBMM	D5G4Q7_TUBMM	D5GDK0	D5G4Q7	Uncharacterized protein.	PHD-type domain-containing protein.	0.794
D5GDK0_TUBMM	D5GAQ4_TUBMM	D5GDK0	D5GAQ4	Uncharacterized protein.	RXT2_N domain-containing protein.	0.788
D5GDK0_TUBMM	D5GLT2_TUBMM	D5GDK0	D5GLT2	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.713
D5GLT2_TUBMM	D5G4Q7_TUBMM	D5GLT2	D5G4Q7	Hist_deacetyl domain-containing protein.	PHD-type domain-containing protein.	0.847
D5GLT2_TUBMM	D5G810_TUBMM	D5GLT2	D5G810	Hist_deacetyl domain-containing protein.	Chromatin modification-related protein.	0.447
D5GLT2_TUBMM	D5GAQ4_TUBMM	D5GLT2	D5GAQ4	Hist_deacetyl domain-containing protein.	RXT2_N domain-containing protein.	0.846
D5GLT2_TUBMM	D5GDK0_TUBMM	D5GLT2	D5GDK0	Hist_deacetyl domain-containing protein.	Uncharacterized protein.	0.713