(8 nodes) Response to amino acid network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G8C4_TUBMM	Uncharacterized protein. (995 aa)
	D5G7Z4_TUBMM	Raptor_N domain-containing protein. (191 aa)
	D5G7Z3_TUBMM	WD_REPEATS_REGION domain-containing protein. (1040 aa)
	D5G3Y2_TUBMM	Uncharacterized protein. (1228 aa)
	D5G3U5_TUBMM	Methyltranfer_dom domain-containing protein. (537 aa)
	D5GCP9_TUBMM	Uncharacterized protein. (349 aa)
	D5G9M5_TUBMM	BAH domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (939 aa)
	D5GJB5_TUBMM	Uncharacterized protein. (285 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G7Z3_TUBMM	D5G7Z4_TUBMM	D5G7Z3	D5G7Z4	WD_REPEATS_REGION domain-containing protein.	Raptor_N domain-containing protein.	0.963
D5G7Z3_TUBMM	D5GCP9_TUBMM	D5G7Z3	D5GCP9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.953
D5G7Z3_TUBMM	D5GJB5_TUBMM	D5G7Z3	D5GJB5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.947
D5G7Z4_TUBMM	D5G7Z3_TUBMM	D5G7Z4	D5G7Z3	Raptor_N domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.963
D5G7Z4_TUBMM	D5GCP9_TUBMM	D5G7Z4	D5GCP9	Raptor_N domain-containing protein.	Uncharacterized protein.	0.953
D5G7Z4_TUBMM	D5GJB5_TUBMM	D5G7Z4	D5GJB5	Raptor_N domain-containing protein.	Uncharacterized protein.	0.947
D5G8C4_TUBMM	D5GCP9_TUBMM	D5G8C4	D5GCP9	Uncharacterized protein.	Uncharacterized protein.	0.699
D5G8C4_TUBMM	D5GJB5_TUBMM	D5G8C4	D5GJB5	Uncharacterized protein.	Uncharacterized protein.	0.631
D5GCP9_TUBMM	D5G7Z3_TUBMM	D5GCP9	D5G7Z3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.953
D5GCP9_TUBMM	D5G7Z4_TUBMM	D5GCP9	D5G7Z4	Uncharacterized protein.	Raptor_N domain-containing protein.	0.953
D5GCP9_TUBMM	D5G8C4_TUBMM	D5GCP9	D5G8C4	Uncharacterized protein.	Uncharacterized protein.	0.699
D5GCP9_TUBMM	D5GJB5_TUBMM	D5GCP9	D5GJB5	Uncharacterized protein.	Uncharacterized protein.	0.999
D5GJB5_TUBMM	D5G7Z3_TUBMM	D5GJB5	D5G7Z3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.947
D5GJB5_TUBMM	D5G7Z4_TUBMM	D5GJB5	D5G7Z4	Uncharacterized protein.	Raptor_N domain-containing protein.	0.947
D5GJB5_TUBMM	D5G8C4_TUBMM	D5GJB5	D5G8C4	Uncharacterized protein.	Uncharacterized protein.	0.631
D5GJB5_TUBMM	D5GCP9_TUBMM	D5GJB5	D5GCP9	Uncharacterized protein.	Uncharacterized protein.	0.999