(13 nodes) Sin3-type complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GLT2_TUBMM	Hist_deacetyl domain-containing protein. (642 aa)
	D5GLP8_TUBMM	Uncharacterized protein. (509 aa)
	D5GHZ2_TUBMM	MRG domain-containing protein. (300 aa)
	D5GHY5_TUBMM	PAPA-1 domain-containing protein. (504 aa)
	D5GHP6_TUBMM	PHD-type domain-containing protein. (990 aa)
	D5GDK0_TUBMM	Uncharacterized protein. (597 aa)
	D5GBJ8_TUBMM	PHD-type domain-containing protein. (714 aa)
	D5GAQ4_TUBMM	RXT2_N domain-containing protein. (499 aa)
	D5G9Y7_TUBMM	SAP30_Sin3_bdg domain-containing protein. (176 aa)
	D5G9U8_TUBMM	Uncharacterized protein. (886 aa)
	D5G884_TUBMM	Uncharacterized protein. (321 aa)
	D5G810_TUBMM	Chromatin modification-related protein. (788 aa)
	D5G4Q7_TUBMM	PHD-type domain-containing protein. (732 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4Q7_TUBMM	D5G9Y7_TUBMM	D5G4Q7	D5G9Y7	PHD-type domain-containing protein.	SAP30_Sin3_bdg domain-containing protein.	0.608
D5G4Q7_TUBMM	D5GAQ4_TUBMM	D5G4Q7	D5GAQ4	PHD-type domain-containing protein.	RXT2_N domain-containing protein.	0.853
D5G4Q7_TUBMM	D5GBJ8_TUBMM	D5G4Q7	D5GBJ8	PHD-type domain-containing protein.	PHD-type domain-containing protein.	0.755
D5G4Q7_TUBMM	D5GDK0_TUBMM	D5G4Q7	D5GDK0	PHD-type domain-containing protein.	Uncharacterized protein.	0.794
D5G4Q7_TUBMM	D5GHY5_TUBMM	D5G4Q7	D5GHY5	PHD-type domain-containing protein.	PAPA-1 domain-containing protein.	0.433
D5G4Q7_TUBMM	D5GHZ2_TUBMM	D5G4Q7	D5GHZ2	PHD-type domain-containing protein.	MRG domain-containing protein.	0.510
D5G4Q7_TUBMM	D5GLP8_TUBMM	D5G4Q7	D5GLP8	PHD-type domain-containing protein.	Uncharacterized protein.	0.628
D5G4Q7_TUBMM	D5GLT2_TUBMM	D5G4Q7	D5GLT2	PHD-type domain-containing protein.	Hist_deacetyl domain-containing protein.	0.847
D5G810_TUBMM	D5GHY5_TUBMM	D5G810	D5GHY5	Chromatin modification-related protein.	PAPA-1 domain-containing protein.	0.607
D5G810_TUBMM	D5GHZ2_TUBMM	D5G810	D5GHZ2	Chromatin modification-related protein.	MRG domain-containing protein.	0.607
D5G810_TUBMM	D5GLP8_TUBMM	D5G810	D5GLP8	Chromatin modification-related protein.	Uncharacterized protein.	0.526
D5G810_TUBMM	D5GLT2_TUBMM	D5G810	D5GLT2	Chromatin modification-related protein.	Hist_deacetyl domain-containing protein.	0.447
D5G9Y7_TUBMM	D5G4Q7_TUBMM	D5G9Y7	D5G4Q7	SAP30_Sin3_bdg domain-containing protein.	PHD-type domain-containing protein.	0.608
D5G9Y7_TUBMM	D5GAQ4_TUBMM	D5G9Y7	D5GAQ4	SAP30_Sin3_bdg domain-containing protein.	RXT2_N domain-containing protein.	0.711
D5G9Y7_TUBMM	D5GBJ8_TUBMM	D5G9Y7	D5GBJ8	SAP30_Sin3_bdg domain-containing protein.	PHD-type domain-containing protein.	0.849
D5G9Y7_TUBMM	D5GDK0_TUBMM	D5G9Y7	D5GDK0	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.496
D5G9Y7_TUBMM	D5GLP8_TUBMM	D5G9Y7	D5GLP8	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.458
D5G9Y7_TUBMM	D5GLT2_TUBMM	D5G9Y7	D5GLT2	SAP30_Sin3_bdg domain-containing protein.	Hist_deacetyl domain-containing protein.	0.478
D5GAQ4_TUBMM	D5G4Q7_TUBMM	D5GAQ4	D5G4Q7	RXT2_N domain-containing protein.	PHD-type domain-containing protein.	0.853
D5GAQ4_TUBMM	D5G9Y7_TUBMM	D5GAQ4	D5G9Y7	RXT2_N domain-containing protein.	SAP30_Sin3_bdg domain-containing protein.	0.711