(21 nodes) ncRNA transcription network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GF07_TUBMM	Histone domain-containing protein. (136 aa)
	D5GPG2_TUBMM	Plus3 domain-containing protein. (567 aa)
	D5GNK2_TUBMM	Uncharacterized protein. (76 aa)
	D5GMC8_TUBMM	Uncharacterized protein. (73 aa)
	D5GMB7_TUBMM	Uncharacterized protein. (954 aa)
	D5GM63_TUBMM	S1 motif domain-containing protein. (180 aa)
	D5GKL8_TUBMM	Uncharacterized protein. (194 aa)
	D5GJJ9_TUBMM	Uncharacterized protein. (422 aa)
	D5GJJ8_TUBMM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (660 aa)
	D5GI23_TUBMM	Uncharacterized protein. (967 aa)
	D5GEE6_TUBMM	Uncharacterized protein. (434 aa)
	D5GEB9_TUBMM	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (618 aa)
	D5GDE1_TUBMM	RNA_pol_L_2 domain-containing protein. (105 aa)
	D5GDB9_TUBMM	Histone domain-containing protein. (152 aa)
	D5G9K1_TUBMM	Uncharacterized protein. (156 aa)
	D5G9G1_TUBMM	Uncharacterized protein. (1645 aa)
	D5G991_TUBMM	SWIB domain-containing protein. (235 aa)
	D5G8V8_TUBMM	Uncharacterized protein. (1025 aa)
	D5G8B9_TUBMM	Uncharacterized protein. (987 aa)
	D5G780_TUBMM	Uncharacterized protein. (298 aa)
	D5G6M5_TUBMM	Uncharacterized protein. (856 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G6M5_TUBMM	D5G780_TUBMM	D5G6M5	D5G780	Uncharacterized protein.	Uncharacterized protein.	0.470
D5G780_TUBMM	D5G6M5_TUBMM	D5G780	D5G6M5	Uncharacterized protein.	Uncharacterized protein.	0.470
D5G780_TUBMM	D5G991_TUBMM	D5G780	D5G991	Uncharacterized protein.	SWIB domain-containing protein.	0.456
D5G780_TUBMM	D5G9K1_TUBMM	D5G780	D5G9K1	Uncharacterized protein.	Uncharacterized protein.	0.495
D5G780_TUBMM	D5GDE1_TUBMM	D5G780	D5GDE1	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.659
D5G780_TUBMM	D5GEE6_TUBMM	D5G780	D5GEE6	Uncharacterized protein.	Uncharacterized protein.	0.809
D5G780_TUBMM	D5GJJ8_TUBMM	D5G780	D5GJJ8	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.620
D5G780_TUBMM	D5GJJ9_TUBMM	D5G780	D5GJJ9	Uncharacterized protein.	Uncharacterized protein.	0.620
D5G780_TUBMM	D5GMC8_TUBMM	D5G780	D5GMC8	Uncharacterized protein.	Uncharacterized protein.	0.615
D5G780_TUBMM	D5GNK2_TUBMM	D5G780	D5GNK2	Uncharacterized protein.	Uncharacterized protein.	0.540
D5G8B9_TUBMM	D5G9K1_TUBMM	D5G8B9	D5G9K1	Uncharacterized protein.	Uncharacterized protein.	0.730
D5G8B9_TUBMM	D5GJJ8_TUBMM	D5G8B9	D5GJJ8	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.425
D5G8B9_TUBMM	D5GJJ9_TUBMM	D5G8B9	D5GJJ9	Uncharacterized protein.	Uncharacterized protein.	0.425
D5G8B9_TUBMM	D5GKL8_TUBMM	D5G8B9	D5GKL8	Uncharacterized protein.	Uncharacterized protein.	0.748
D5G8B9_TUBMM	D5GMB7_TUBMM	D5G8B9	D5GMB7	Uncharacterized protein.	Uncharacterized protein.	0.958
D5G8B9_TUBMM	D5GNK2_TUBMM	D5G8B9	D5GNK2	Uncharacterized protein.	Uncharacterized protein.	0.800
D5G8V8_TUBMM	D5G9K1_TUBMM	D5G8V8	D5G9K1	Uncharacterized protein.	Uncharacterized protein.	0.566
D5G8V8_TUBMM	D5GDB9_TUBMM	D5G8V8	D5GDB9	Uncharacterized protein.	Histone domain-containing protein.	0.476
D5G8V8_TUBMM	D5GEE6_TUBMM	D5G8V8	D5GEE6	Uncharacterized protein.	Uncharacterized protein.	0.772
D5G8V8_TUBMM	D5GF07_TUBMM	D5G8V8	D5GF07	Uncharacterized protein.	Histone domain-containing protein.	0.476