(14 nodes) Regulation of response to DNA damage stimulus network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GCF5_TUBMM	Uncharacterized protein. (333 aa)
	D5GHY6_TUBMM	AAA domain-containing protein. (422 aa)
	D5GH09_TUBMM	WD_REPEATS_REGION domain-containing protein. (395 aa)
	D5GEK2_TUBMM	Zn(2)-C6 fungal-type domain-containing protein. (577 aa)
	D5GEJ9_TUBMM	DUF89 domain-containing protein. (449 aa)
	D5GJ75_TUBMM	Uncharacterized protein. (407 aa)
	D5GA54_TUBMM	WD_REPEATS_REGION domain-containing protein. (569 aa)
	D5G8W4_TUBMM	SMK-1 domain-containing protein. (868 aa)
	D5G749_TUBMM	TPR_REGION domain-containing protein. (818 aa)
	D5GGZ7_TUBMM	Uncharacterized protein. (392 aa)
	D5GPG2_TUBMM	Plus3 domain-containing protein. (567 aa)
	D5GNI2_TUBMM	SER_THR_PHOSPHATASE domain-containing protein. (311 aa)
	D5GKD2_TUBMM	Uncharacterized protein. (697 aa)
	D5GK23_TUBMM	Uncharacterized protein. (358 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G749_TUBMM	D5GA54_TUBMM	D5G749	D5GA54	TPR_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990
D5G8W4_TUBMM	D5GJ75_TUBMM	D5G8W4	D5GJ75	SMK-1 domain-containing protein.	Uncharacterized protein.	0.996
D5G8W4_TUBMM	D5GNI2_TUBMM	D5G8W4	D5GNI2	SMK-1 domain-containing protein.	SER_THR_PHOSPHATASE domain-containing protein.	0.979
D5GA54_TUBMM	D5G749_TUBMM	D5GA54	D5G749	WD_REPEATS_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.990
D5GA54_TUBMM	D5GH09_TUBMM	D5GA54	D5GH09	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.604
D5GH09_TUBMM	D5GA54_TUBMM	D5GH09	D5GA54	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.604
D5GH09_TUBMM	D5GK23_TUBMM	D5GH09	D5GK23	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.611
D5GJ75_TUBMM	D5G8W4_TUBMM	D5GJ75	D5G8W4	Uncharacterized protein.	SMK-1 domain-containing protein.	0.996
D5GJ75_TUBMM	D5GNI2_TUBMM	D5GJ75	D5GNI2	Uncharacterized protein.	SER_THR_PHOSPHATASE domain-containing protein.	0.999
D5GK23_TUBMM	D5GH09_TUBMM	D5GK23	D5GH09	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.611
D5GNI2_TUBMM	D5G8W4_TUBMM	D5GNI2	D5G8W4	SER_THR_PHOSPHATASE domain-containing protein.	SMK-1 domain-containing protein.	0.979
D5GNI2_TUBMM	D5GJ75_TUBMM	D5GNI2	D5GJ75	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.999