(22 nodes) SCF ubiquitin ligase complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G9G0_TUBMM	F-box domain-containing protein. (605 aa)
	D5G8J8_TUBMM	Uncharacterized protein. (542 aa)
	D5G6M0_TUBMM	CULLIN_2 domain-containing protein; Belongs to the cullin family. (768 aa)
	D5G671_TUBMM	Uncharacterized protein. (354 aa)
	D5G614_TUBMM	Ubiquitin-like domain-containing protein. (77 aa)
	D5G542_TUBMM	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	D5G4I4_TUBMM	Uncharacterized protein. (349 aa)
	D5G4G3_TUBMM	F-box domain-containing protein. (613 aa)
	D5G3V9_TUBMM	F-box domain-containing protein. (552 aa)
	D5GN09_TUBMM	Uncharacterized protein. (757 aa)
	D5GKY6_TUBMM	LisH domain-containing protein. (416 aa)
	D5GIM7_TUBMM	F-box domain-containing protein. (415 aa)
	D5GNH8_TUBMM	Uncharacterized protein. (173 aa)
	D5GIC9_TUBMM	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (112 aa)
	D5GGD9_TUBMM	WD_REPEATS_REGION domain-containing protein. (732 aa)
	D5GG65_TUBMM	Uncharacterized protein. (907 aa)
	D5GFF4_TUBMM	F-box domain-containing protein. (517 aa)
	D5GEG0_TUBMM	Sulfatase domain-containing protein. (573 aa)
	D5GBL0_TUBMM	Uncharacterized protein. (530 aa)
	D5GBB1_TUBMM	Uncharacterized protein. (717 aa)
	D5GAF0_TUBMM	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (236 aa)
	D5G9X1_TUBMM	Ubiquitin-like domain-containing protein. (77 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4G3_TUBMM	D5G614_TUBMM	D5G4G3	D5G614	F-box domain-containing protein.	Ubiquitin-like domain-containing protein.	0.599
D5G4G3_TUBMM	D5G6M0_TUBMM	D5G4G3	D5G6M0	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.605
D5G4G3_TUBMM	D5G9X1_TUBMM	D5G4G3	D5G9X1	F-box domain-containing protein.	Ubiquitin-like domain-containing protein.	0.599
D5G542_TUBMM	D5G614_TUBMM	D5G542	D5G614	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.429
D5G542_TUBMM	D5G6M0_TUBMM	D5G542	D5G6M0	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.787
D5G542_TUBMM	D5G9X1_TUBMM	D5G542	D5G9X1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.429
D5G542_TUBMM	D5GAF0_TUBMM	D5G542	D5GAF0	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.601
D5G542_TUBMM	D5GBB1_TUBMM	D5G542	D5GBB1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.476
D5G542_TUBMM	D5GBL0_TUBMM	D5G542	D5GBL0	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.604
D5G542_TUBMM	D5GGD9_TUBMM	D5G542	D5GGD9	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	WD_REPEATS_REGION domain-containing protein.	0.604
D5G614_TUBMM	D5G4G3_TUBMM	D5G614	D5G4G3	Ubiquitin-like domain-containing protein.	F-box domain-containing protein.	0.599
D5G614_TUBMM	D5G542_TUBMM	D5G614	D5G542	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.429
D5G614_TUBMM	D5G6M0_TUBMM	D5G614	D5G6M0	Ubiquitin-like domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.881
D5G614_TUBMM	D5G9G0_TUBMM	D5G614	D5G9G0	Ubiquitin-like domain-containing protein.	F-box domain-containing protein.	0.485
D5G614_TUBMM	D5GBB1_TUBMM	D5G614	D5GBB1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.469
D5G614_TUBMM	D5GBL0_TUBMM	D5G614	D5GBL0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.596
D5G614_TUBMM	D5GFF4_TUBMM	D5G614	D5GFF4	Ubiquitin-like domain-containing protein.	F-box domain-containing protein.	0.614
D5G614_TUBMM	D5GG65_TUBMM	D5G614	D5GG65	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.485
D5G614_TUBMM	D5GGD9_TUBMM	D5G614	D5GGD9	Ubiquitin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.596
D5G614_TUBMM	D5GIC9_TUBMM	D5G614	D5GIC9	Ubiquitin-like domain-containing protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.504