(44 nodes) Extrinsic component of membrane network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GGN6_TUBMM	Uncharacterized protein. (533 aa)
	D5GA31_TUBMM	Uncharacterized protein. (1051 aa)
	D5GD78_TUBMM	FAD-binding FR-type domain-containing protein. (332 aa)
	D5GD73_TUBMM	Uncharacterized protein. (313 aa)
	D5GD18_TUBMM	Uncharacterized protein. (1529 aa)
	D5GBN5_TUBMM	Uncharacterized protein. (888 aa)
	D5GB50_TUBMM	Uncharacterized protein. (205 aa)
	D5G3U4_TUBMM	Uncharacterized protein. (1072 aa)
	D5G3Y2_TUBMM	Uncharacterized protein. (1228 aa)
	D5G4G2_TUBMM	PXA domain-containing protein. (511 aa)
	D5G4Q0_TUBMM	Uncharacterized protein. (2527 aa)
	D5G521_TUBMM	AMP_N domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (678 aa)
	D5G532_TUBMM	Uncharacterized protein. (812 aa)
	D5G652_TUBMM	GYF domain-containing protein. (1607 aa)
	D5G6A2_TUBMM	LNS2 domain-containing protein. (783 aa)
	D5G7S7_TUBMM	Uncharacterized protein. (272 aa)
	D5G7W7_TUBMM	Uncharacterized protein. (376 aa)
	D5G8M3_TUBMM	Uncharacterized protein. (870 aa)
	D5G8Q5_TUBMM	Methyltransf_11 domain-containing protein. (329 aa)
	D5G8U8_TUBMM	Phosphatidylinositol 3-kinase VPS34. (812 aa)
	D5G9F0_TUBMM	Uncharacterized protein. (687 aa)
	D5GPY6_TUBMM	G protein gamma domain-containing protein. (88 aa)
	D5GPN6_TUBMM	UBX domain-containing protein. (501 aa)
	D5GNL8_TUBMM	Uncharacterized protein. (350 aa)
	D5GNJ2_TUBMM	OBG-type G domain-containing protein. (533 aa)
	D5GNF8_TUBMM	Uncharacterized protein. (2319 aa)
	D5GLB9_TUBMM	Uncharacterized protein. (596 aa)
	D5GLA9_TUBMM	WD_REPEATS_REGION domain-containing protein. (347 aa)
	D5GL84_TUBMM	DEP domain-containing protein. (1379 aa)
	D5GL83_TUBMM	Uncharacterized protein. (402 aa)
	D5GL45_TUBMM	SAC domain-containing protein. (1015 aa)
	D5GL21_TUBMM	Protein kinase domain-containing protein. (836 aa)
	D5GKX8_TUBMM	Uncharacterized protein. (86 aa)
	D5GK06_TUBMM	DHO_dh domain-containing protein. (313 aa)
	ALG13	UDP-N-acetylglucosamine transferase subunit ALG13; Involved in protein N-glycosylation. Essential for the second step of the dolichol-linked oligosaccharide pathway. (178 aa)
	D5GJ48_TUBMM	Uncharacterized protein. (485 aa)
	COQ6	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6. (487 aa)
	D5GI03_TUBMM	Uncharacterized protein. (219 aa)
	D5GH69_TUBMM	Uncharacterized protein. (306 aa)
	D5GGP7_TUBMM	Uncharacterized protein. (840 aa)
	D5GEI7_TUBMM	Erf4 domain-containing protein. (224 aa)
	D5GEF7_TUBMM	ABC1 domain-containing protein. (763 aa)
	D5GE87_TUBMM	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (336 aa)
	D5GE35_TUBMM	zf-Mss51 domain-containing protein. (482 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COQ6	D5G7S7_TUBMM	D5GIZ9	D5G7S7	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	Uncharacterized protein.	0.461
COQ6	D5GEF7_TUBMM	D5GIZ9	D5GEF7	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	ABC1 domain-containing protein.	0.723
D5G3U4_TUBMM	D5GB50_TUBMM	D5G3U4	D5GB50	Uncharacterized protein.	Uncharacterized protein.	0.722
D5G3U4_TUBMM	D5GH69_TUBMM	D5G3U4	D5GH69	Uncharacterized protein.	Uncharacterized protein.	0.722
D5G4G2_TUBMM	D5GE35_TUBMM	D5G4G2	D5GE35	PXA domain-containing protein.	zf-Mss51 domain-containing protein.	0.582
D5G4Q0_TUBMM	D5GJ48_TUBMM	D5G4Q0	D5GJ48	Uncharacterized protein.	Uncharacterized protein.	0.413
D5G4Q0_TUBMM	D5GL45_TUBMM	D5G4Q0	D5GL45	Uncharacterized protein.	SAC domain-containing protein.	0.483
D5G532_TUBMM	D5G8M3_TUBMM	D5G532	D5G8M3	Uncharacterized protein.	Uncharacterized protein.	0.910
D5G532_TUBMM	D5GGP7_TUBMM	D5G532	D5GGP7	Uncharacterized protein.	Uncharacterized protein.	0.776
D5G7S7_TUBMM	COQ6	D5G7S7	D5GIZ9	Uncharacterized protein.	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	0.461
D5G7S7_TUBMM	D5GEF7_TUBMM	D5G7S7	D5GEF7	Uncharacterized protein.	ABC1 domain-containing protein.	0.760
D5G8M3_TUBMM	D5G532_TUBMM	D5G8M3	D5G532	Uncharacterized protein.	Uncharacterized protein.	0.910
D5G8U8_TUBMM	D5GD18_TUBMM	D5G8U8	D5GD18	Phosphatidylinositol 3-kinase VPS34.	Uncharacterized protein.	0.999
D5G8U8_TUBMM	D5GGP7_TUBMM	D5G8U8	D5GGP7	Phosphatidylinositol 3-kinase VPS34.	Uncharacterized protein.	0.565
D5G8U8_TUBMM	D5GJ48_TUBMM	D5G8U8	D5GJ48	Phosphatidylinositol 3-kinase VPS34.	Uncharacterized protein.	0.999
D5G8U8_TUBMM	D5GL21_TUBMM	D5G8U8	D5GL21	Phosphatidylinositol 3-kinase VPS34.	Protein kinase domain-containing protein.	0.994
D5G8U8_TUBMM	D5GL45_TUBMM	D5G8U8	D5GL45	Phosphatidylinositol 3-kinase VPS34.	SAC domain-containing protein.	0.944
D5G8U8_TUBMM	D5GLB9_TUBMM	D5G8U8	D5GLB9	Phosphatidylinositol 3-kinase VPS34.	Uncharacterized protein.	0.997
D5G8U8_TUBMM	D5GNF8_TUBMM	D5G8U8	D5GNF8	Phosphatidylinositol 3-kinase VPS34.	Uncharacterized protein.	0.965
D5G9F0_TUBMM	D5GE87_TUBMM	D5G9F0	D5GE87	Uncharacterized protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.961