(17 nodes) Sin3-type complex network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G9U8_TUBMM	Uncharacterized protein. (886 aa)
	D5G4Q7_TUBMM	PHD-type domain-containing protein. (732 aa)
	D5G5W8_TUBMM	Uncharacterized protein. (604 aa)
	D5G810_TUBMM	Chromatin modification-related protein. (788 aa)
	D5G884_TUBMM	Uncharacterized protein. (321 aa)
	D5G9Y7_TUBMM	SAP30_Sin3_bdg domain-containing protein. (176 aa)
	D5GAQ4_TUBMM	RXT2_N domain-containing protein. (499 aa)
	D5GBJ8_TUBMM	PHD-type domain-containing protein. (714 aa)
	D5GDK0_TUBMM	Uncharacterized protein. (597 aa)
	D5GEI8_TUBMM	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (892 aa)
	D5GHP6_TUBMM	PHD-type domain-containing protein. (990 aa)
	D5GHZ2_TUBMM	MRG domain-containing protein. (300 aa)
	D5GID4_TUBMM	HDAC_interact domain-containing protein. (1394 aa)
	D5GIX5_TUBMM	Thioredoxin-like_fold domain-containing protein. (205 aa)
	D5GLP8_TUBMM	Uncharacterized protein. (509 aa)
	D5GLT2_TUBMM	Hist_deacetyl domain-containing protein. (642 aa)
	D5GP67_TUBMM	WD_REPEATS_REGION domain-containing protein. (436 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4Q7_TUBMM	D5G5W8_TUBMM	D5G4Q7	D5G5W8	PHD-type domain-containing protein.	Uncharacterized protein.	0.678
D5G4Q7_TUBMM	D5G9Y7_TUBMM	D5G4Q7	D5G9Y7	PHD-type domain-containing protein.	SAP30_Sin3_bdg domain-containing protein.	0.608
D5G4Q7_TUBMM	D5GAQ4_TUBMM	D5G4Q7	D5GAQ4	PHD-type domain-containing protein.	RXT2_N domain-containing protein.	0.853
D5G4Q7_TUBMM	D5GBJ8_TUBMM	D5G4Q7	D5GBJ8	PHD-type domain-containing protein.	PHD-type domain-containing protein.	0.755
D5G4Q7_TUBMM	D5GDK0_TUBMM	D5G4Q7	D5GDK0	PHD-type domain-containing protein.	Uncharacterized protein.	0.794
D5G4Q7_TUBMM	D5GHZ2_TUBMM	D5G4Q7	D5GHZ2	PHD-type domain-containing protein.	MRG domain-containing protein.	0.510
D5G4Q7_TUBMM	D5GID4_TUBMM	D5G4Q7	D5GID4	PHD-type domain-containing protein.	HDAC_interact domain-containing protein.	0.834
D5G4Q7_TUBMM	D5GIX5_TUBMM	D5G4Q7	D5GIX5	PHD-type domain-containing protein.	Thioredoxin-like_fold domain-containing protein.	0.406
D5G4Q7_TUBMM	D5GLP8_TUBMM	D5G4Q7	D5GLP8	PHD-type domain-containing protein.	Uncharacterized protein.	0.628
D5G4Q7_TUBMM	D5GLT2_TUBMM	D5G4Q7	D5GLT2	PHD-type domain-containing protein.	Hist_deacetyl domain-containing protein.	0.847
D5G4Q7_TUBMM	D5GP67_TUBMM	D5G4Q7	D5GP67	PHD-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.478
D5G5W8_TUBMM	D5G4Q7_TUBMM	D5G5W8	D5G4Q7	Uncharacterized protein.	PHD-type domain-containing protein.	0.678
D5G5W8_TUBMM	D5G9Y7_TUBMM	D5G5W8	D5G9Y7	Uncharacterized protein.	SAP30_Sin3_bdg domain-containing protein.	0.817
D5G5W8_TUBMM	D5GAQ4_TUBMM	D5G5W8	D5GAQ4	Uncharacterized protein.	RXT2_N domain-containing protein.	0.715
D5G5W8_TUBMM	D5GBJ8_TUBMM	D5G5W8	D5GBJ8	Uncharacterized protein.	PHD-type domain-containing protein.	0.560
D5G5W8_TUBMM	D5GDK0_TUBMM	D5G5W8	D5GDK0	Uncharacterized protein.	Uncharacterized protein.	0.420
D5G5W8_TUBMM	D5GID4_TUBMM	D5G5W8	D5GID4	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.487
D5G5W8_TUBMM	D5GLT2_TUBMM	D5G5W8	D5GLT2	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.801
D5G5W8_TUBMM	D5GP67_TUBMM	D5G5W8	D5GP67	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.524
D5G810_TUBMM	D5GHZ2_TUBMM	D5G810	D5GHZ2	Chromatin modification-related protein.	MRG domain-containing protein.	0.607