(20 nodes) SNF2, N-terminal network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G532_TUBMM	Uncharacterized protein. (812 aa)
	D5G6N1_TUBMM	Uncharacterized protein. (591 aa)
	D5G6P5_TUBMM	Uncharacterized protein. (876 aa)
	D5G8M3_TUBMM	Uncharacterized protein. (870 aa)
	D5G9E1_TUBMM	Uncharacterized protein. (1444 aa)
	D5G9G1_TUBMM	Uncharacterized protein. (1645 aa)
	D5GA96_TUBMM	Uncharacterized protein. (1362 aa)
	D5GBT8_TUBMM	Helicase C-terminal domain-containing protein. (2127 aa)
	D5GDH9_TUBMM	Uncharacterized protein. (1069 aa)
	D5GDM7_TUBMM	Uncharacterized protein. (1062 aa)
	D5GED6_TUBMM	Helicase ATP-binding domain-containing protein. (123 aa)
	D5GED7_TUBMM	Helicase C-terminal domain-containing protein. (404 aa)
	D5GEI4_TUBMM	Uncharacterized protein. (1100 aa)
	D5GFR2_TUBMM	Uncharacterized protein. (759 aa)
	D5GIQ8_TUBMM	Uncharacterized protein. (1119 aa)
	D5GIZ2_TUBMM	Uncharacterized protein. (1154 aa)
	D5GKU8_TUBMM	Uncharacterized protein. (1046 aa)
	D5GMV9_TUBMM	Uncharacterized protein. (1022 aa)
	D5GNB7_TUBMM	Uncharacterized protein. (823 aa)
	D5GPG9_TUBMM	Uncharacterized protein. (1480 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G532_TUBMM	D5G8M3_TUBMM	D5G532	D5G8M3	Uncharacterized protein.	Uncharacterized protein.	0.910
D5G532_TUBMM	D5GMV9_TUBMM	D5G532	D5GMV9	Uncharacterized protein.	Uncharacterized protein.	0.490
D5G6N1_TUBMM	D5G6P5_TUBMM	D5G6N1	D5G6P5	Uncharacterized protein.	Uncharacterized protein.	0.419
D5G6N1_TUBMM	D5G8M3_TUBMM	D5G6N1	D5G8M3	Uncharacterized protein.	Uncharacterized protein.	0.422
D5G6N1_TUBMM	D5G9G1_TUBMM	D5G6N1	D5G9G1	Uncharacterized protein.	Uncharacterized protein.	0.414
D5G6N1_TUBMM	D5GDM7_TUBMM	D5G6N1	D5GDM7	Uncharacterized protein.	Uncharacterized protein.	0.416
D5G6N1_TUBMM	D5GFR2_TUBMM	D5G6N1	D5GFR2	Uncharacterized protein.	Uncharacterized protein.	0.408
D5G6N1_TUBMM	D5GMV9_TUBMM	D5G6N1	D5GMV9	Uncharacterized protein.	Uncharacterized protein.	0.406
D5G6N1_TUBMM	D5GNB7_TUBMM	D5G6N1	D5GNB7	Uncharacterized protein.	Uncharacterized protein.	0.400
D5G6P5_TUBMM	D5G6N1_TUBMM	D5G6P5	D5G6N1	Uncharacterized protein.	Uncharacterized protein.	0.419
D5G6P5_TUBMM	D5GDH9_TUBMM	D5G6P5	D5GDH9	Uncharacterized protein.	Uncharacterized protein.	0.429
D5G6P5_TUBMM	D5GED6_TUBMM	D5G6P5	D5GED6	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.541
D5G8M3_TUBMM	D5G532_TUBMM	D5G8M3	D5G532	Uncharacterized protein.	Uncharacterized protein.	0.910
D5G8M3_TUBMM	D5G6N1_TUBMM	D5G8M3	D5G6N1	Uncharacterized protein.	Uncharacterized protein.	0.422
D5G8M3_TUBMM	D5GED6_TUBMM	D5G8M3	D5GED6	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.532
D5G8M3_TUBMM	D5GMV9_TUBMM	D5G8M3	D5GMV9	Uncharacterized protein.	Uncharacterized protein.	0.493
D5G9E1_TUBMM	D5GA96_TUBMM	D5G9E1	D5GA96	Uncharacterized protein.	Uncharacterized protein.	0.461
D5G9E1_TUBMM	D5GDH9_TUBMM	D5G9E1	D5GDH9	Uncharacterized protein.	Uncharacterized protein.	0.692
D5G9E1_TUBMM	D5GPG9_TUBMM	D5G9E1	D5GPG9	Uncharacterized protein.	Uncharacterized protein.	0.489
D5G9G1_TUBMM	D5G6N1_TUBMM	D5G9G1	D5G6N1	Uncharacterized protein.	Uncharacterized protein.	0.414