(4 nodes) Clathrin, heavy chain/VPS, 7-fold repeat network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GD76_TUBMM	Pep3_Vps18 domain-containing protein. (878 aa)
	D5GAZ2_TUBMM	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1602 aa)
	D5GHM2_TUBMM	Uncharacterized protein. (1201 aa)
	D5GE27_TUBMM	E3 ubiquitin-protein ligase PEP5. (961 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5GAZ2_TUBMM	D5GD76_TUBMM	D5GAZ2	D5GD76	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Pep3_Vps18 domain-containing protein.	0.442
D5GAZ2_TUBMM	D5GHM2_TUBMM	D5GAZ2	D5GHM2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.446
D5GD76_TUBMM	D5GAZ2_TUBMM	D5GD76	D5GAZ2	Pep3_Vps18 domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.442
D5GD76_TUBMM	D5GE27_TUBMM	D5GD76	D5GE27	Pep3_Vps18 domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.996
D5GD76_TUBMM	D5GHM2_TUBMM	D5GD76	D5GHM2	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.996
D5GE27_TUBMM	D5GD76_TUBMM	D5GE27	D5GD76	E3 ubiquitin-protein ligase PEP5.	Pep3_Vps18 domain-containing protein.	0.996
D5GE27_TUBMM	D5GHM2_TUBMM	D5GE27	D5GHM2	E3 ubiquitin-protein ligase PEP5.	Uncharacterized protein.	0.997
D5GHM2_TUBMM	D5GAZ2_TUBMM	D5GHM2	D5GAZ2	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.446
D5GHM2_TUBMM	D5GD76_TUBMM	D5GHM2	D5GD76	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.996
D5GHM2_TUBMM	D5GE27_TUBMM	D5GHM2	D5GE27	Uncharacterized protein.	E3 ubiquitin-protein ligase PEP5.	0.997