(10 nodes) Helicase-associated domain network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GNZ3_TUBMM	Uncharacterized protein. (1488 aa)
	D5GNI7_TUBMM	Uncharacterized protein. (825 aa)
	D5GND5_TUBMM	Uncharacterized protein. (1227 aa)
	D5GME8_TUBMM	Uncharacterized protein. (761 aa)
	D5GHN0_TUBMM	Uncharacterized protein. (633 aa)
	D5GFY3_TUBMM	Uncharacterized protein. (1170 aa)
	D5GBZ5_TUBMM	Uncharacterized protein. (1303 aa)
	D5G907_TUBMM	Uncharacterized protein. (593 aa)
	D5G8P8_TUBMM	Uncharacterized protein. (676 aa)
	D5G6E0_TUBMM	Helicase ATP-binding domain-containing protein. (1236 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G6E0_TUBMM	D5GFY3_TUBMM	D5G6E0	D5GFY3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.421
D5G8P8_TUBMM	D5GFY3_TUBMM	D5G8P8	D5GFY3	Uncharacterized protein.	Uncharacterized protein.	0.766
D5G8P8_TUBMM	D5GME8_TUBMM	D5G8P8	D5GME8	Uncharacterized protein.	Uncharacterized protein.	0.695
D5G8P8_TUBMM	D5GND5_TUBMM	D5G8P8	D5GND5	Uncharacterized protein.	Uncharacterized protein.	0.687
D5G907_TUBMM	D5GFY3_TUBMM	D5G907	D5GFY3	Uncharacterized protein.	Uncharacterized protein.	0.771
D5G907_TUBMM	D5GME8_TUBMM	D5G907	D5GME8	Uncharacterized protein.	Uncharacterized protein.	0.700
D5G907_TUBMM	D5GND5_TUBMM	D5G907	D5GND5	Uncharacterized protein.	Uncharacterized protein.	0.695
D5GBZ5_TUBMM	D5GFY3_TUBMM	D5GBZ5	D5GFY3	Uncharacterized protein.	Uncharacterized protein.	0.423
D5GFY3_TUBMM	D5G6E0_TUBMM	D5GFY3	D5G6E0	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.421
D5GFY3_TUBMM	D5G8P8_TUBMM	D5GFY3	D5G8P8	Uncharacterized protein.	Uncharacterized protein.	0.766
D5GFY3_TUBMM	D5G907_TUBMM	D5GFY3	D5G907	Uncharacterized protein.	Uncharacterized protein.	0.771
D5GFY3_TUBMM	D5GBZ5_TUBMM	D5GFY3	D5GBZ5	Uncharacterized protein.	Uncharacterized protein.	0.423
D5GFY3_TUBMM	D5GME8_TUBMM	D5GFY3	D5GME8	Uncharacterized protein.	Uncharacterized protein.	0.775
D5GFY3_TUBMM	D5GNI7_TUBMM	D5GFY3	D5GNI7	Uncharacterized protein.	Uncharacterized protein.	0.985
D5GFY3_TUBMM	D5GNZ3_TUBMM	D5GFY3	D5GNZ3	Uncharacterized protein.	Uncharacterized protein.	0.413
D5GHN0_TUBMM	D5GND5_TUBMM	D5GHN0	D5GND5	Uncharacterized protein.	Uncharacterized protein.	0.972
D5GME8_TUBMM	D5G8P8_TUBMM	D5GME8	D5G8P8	Uncharacterized protein.	Uncharacterized protein.	0.695
D5GME8_TUBMM	D5G907_TUBMM	D5GME8	D5G907	Uncharacterized protein.	Uncharacterized protein.	0.700
D5GME8_TUBMM	D5GFY3_TUBMM	D5GME8	D5GFY3	Uncharacterized protein.	Uncharacterized protein.	0.775
D5GME8_TUBMM	D5GND5_TUBMM	D5GME8	D5GND5	Uncharacterized protein.	Uncharacterized protein.	0.405