(82 nodes) Zinc finger, RING/FYVE/PHD-type network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GM58_TUBMM	Uncharacterized protein. (232 aa)
	D5GMV9_TUBMM	Uncharacterized protein. (1022 aa)
	D5GMW8_TUBMM	Uncharacterized protein. (647 aa)
	D5GN99_TUBMM	Uncharacterized protein. (9545 aa)
	D5GNA9_TUBMM	Uncharacterized protein. (545 aa)
	D5GNF8_TUBMM	Uncharacterized protein. (2319 aa)
	D5GNK3_TUBMM	Uncharacterized protein. (687 aa)
	D5GNT6_TUBMM	Uncharacterized protein. (379 aa)
	D5GP40_TUBMM	CTLH domain-containing protein. (381 aa)
	D5GP65_TUBMM	Uncharacterized protein. (1697 aa)
	D5GGI9_TUBMM	RING-type domain-containing protein. (802 aa)
	D5G3Z7_TUBMM	Uncharacterized protein. (624 aa)
	D5G424_TUBMM	U-box domain-containing protein. (1072 aa)
	D5G454_TUBMM	Uncharacterized protein. (392 aa)
	D5G4Q7_TUBMM	PHD-type domain-containing protein. (732 aa)
	D5G5M0_TUBMM	RING-type domain-containing protein. (884 aa)
	D5G6C2_TUBMM	zf-RING-like domain-containing protein. (343 aa)
	D5G6F5_TUBMM	RING-type domain-containing protein. (566 aa)
	D5G6J4_TUBMM	Uncharacterized protein. (511 aa)
	D5G6P4_TUBMM	RING-type domain-containing protein. (291 aa)
	D5G6T9_TUBMM	Uncharacterized protein. (997 aa)
	D5G7A7_TUBMM	RING-type domain-containing protein. (112 aa)
	D5G7D1_TUBMM	RING-type domain-containing protein. (578 aa)
	D5G7G8_TUBMM	Uncharacterized protein. (1134 aa)
	D5G7W3_TUBMM	HTH TFE/IIEalpha-type domain-containing protein. (454 aa)
	D5G7Y6_TUBMM	Uncharacterized protein. (663 aa)
	D5G810_TUBMM	Chromatin modification-related protein. (788 aa)
	D5G857_TUBMM	Uncharacterized protein. (487 aa)
	D5G8A1_TUBMM	RING-type domain-containing protein. (412 aa)
	D5G8U5_TUBMM	Uncharacterized protein. (336 aa)
	D5G8V3_TUBMM	RING-type domain-containing protein. (70 aa)
	D5G9H9_TUBMM	Uncharacterized protein. (586 aa)
	D5G9V4_TUBMM	Uncharacterized protein. (1080 aa)
	D5GA87_TUBMM	Uncharacterized protein. (535 aa)
	D5GAD5_TUBMM	E3 ubiquitin protein ligase. (722 aa)
	D5GAJ2_TUBMM	HORMA domain-containing protein. (840 aa)
	D5GAU8_TUBMM	PHD domain-containing protein. (673 aa)
	D5GAV5_TUBMM	Uncharacterized protein. (581 aa)
	D5GAX1_TUBMM	Uncharacterized protein. (550 aa)
	D5GBA7_TUBMM	RING-type domain-containing protein. (643 aa)
	D5GBJ8_TUBMM	PHD-type domain-containing protein. (714 aa)
	D5GBQ8_TUBMM	Ubiquitin carboxyl-terminal hydrolase. (789 aa)
	D5GC42_TUBMM	Uncharacterized protein. (256 aa)
	D5GCN7_TUBMM	RING-type domain-containing protein. (86 aa)
	D5GD30_TUBMM	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (689 aa)
	D5GD34_TUBMM	RBR-type E3 ubiquitin transferase. (507 aa)
	D5GDM7_TUBMM	Uncharacterized protein. (1062 aa)
	D5GDN0_TUBMM	SP-RING-type domain-containing protein. (882 aa)
	D5GE27_TUBMM	E3 ubiquitin-protein ligase PEP5. (961 aa)
	D5GE60_TUBMM	PHD domain-containing protein. (840 aa)
	D5GE90_TUBMM	RING-type domain-containing protein. (968 aa)
	D5GE92_TUBMM	RING-type domain-containing protein. (770 aa)
	D5GEP9_TUBMM	Uncharacterized protein. (199 aa)
	D5GF25_TUBMM	RING-type domain-containing protein. (1674 aa)
	D5GFQ5_TUBMM	Uncharacterized protein. (1293 aa)
	D5GG50_TUBMM	Chromatin modification-related protein. (333 aa)
	D5GLX3_TUBMM	RING-type domain-containing protein. (540 aa)
	D5GLQ9_TUBMM	RING-type domain-containing protein. (224 aa)
	D5GLM3_TUBMM	RING-type domain-containing protein. (676 aa)
	D5GLL4_TUBMM	RING-type domain-containing protein. (360 aa)
	D5GLE4_TUBMM	RING-type domain-containing protein. (747 aa)
	D5GLD4_TUBMM	Uncharacterized protein. (534 aa)
	D5GLA5_TUBMM	Uncharacterized protein. (506 aa)
	D5GL94_TUBMM	zf-C3HC4 domain-containing protein. (100 aa)
	D5GKZ9_TUBMM	Uncharacterized protein. (1313 aa)
	D5GKG2_TUBMM	RING-CH-type domain-containing protein. (1699 aa)
	D5GK93_TUBMM	RING-type domain-containing protein. (769 aa)
	D5GK82_TUBMM	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (469 aa)
	D5GJS2_TUBMM	PHD-type domain-containing protein. (534 aa)
	SLX1	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (431 aa)
	D5GJE8_TUBMM	RBR-type E3 ubiquitin transferase. (432 aa)
	D5GJ63_TUBMM	RING-type domain-containing protein. (417 aa)
	D5GJ02_TUBMM	RING-type domain-containing protein. (642 aa)
	D5GIN2_TUBMM	RING-type domain-containing protein. (373 aa)
	D5GIJ3_TUBMM	FYVE-type domain-containing protein. (285 aa)
	D5GIC1_TUBMM	BAH domain-containing protein. (411 aa)
	D5GHP6_TUBMM	PHD-type domain-containing protein. (990 aa)
	D5GHH3_TUBMM	SP-RING-type domain-containing protein. (352 aa)
	D5GH28_TUBMM	Uncharacterized protein. (611 aa)
	D5GH24_TUBMM	RING-type domain-containing protein. (231 aa)
	D5GGP1_TUBMM	Ubiquitin carboxyl-terminal hydrolase. (524 aa)
	D5GGJ0_TUBMM	RING-type domain-containing protein. (338 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G424_TUBMM	D5GC42_TUBMM	D5G424	D5GC42	U-box domain-containing protein.	Uncharacterized protein.	0.628
D5G424_TUBMM	D5GE90_TUBMM	D5G424	D5GE90	U-box domain-containing protein.	RING-type domain-containing protein.	0.416
D5G424_TUBMM	D5GF25_TUBMM	D5G424	D5GF25	U-box domain-containing protein.	RING-type domain-containing protein.	0.438
D5G424_TUBMM	D5GKG2_TUBMM	D5G424	D5GKG2	U-box domain-containing protein.	RING-CH-type domain-containing protein.	0.450
D5G4Q7_TUBMM	D5GBJ8_TUBMM	D5G4Q7	D5GBJ8	PHD-type domain-containing protein.	PHD-type domain-containing protein.	0.755
D5G6C2_TUBMM	D5GHH3_TUBMM	D5G6C2	D5GHH3	zf-RING-like domain-containing protein.	SP-RING-type domain-containing protein.	0.999
D5G6J4_TUBMM	D5GA87_TUBMM	D5G6J4	D5GA87	Uncharacterized protein.	Uncharacterized protein.	0.510
D5G6J4_TUBMM	D5GDN0_TUBMM	D5G6J4	D5GDN0	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.510
D5G7A7_TUBMM	D5G8A1_TUBMM	D5G7A7	D5G8A1	RING-type domain-containing protein.	RING-type domain-containing protein.	0.433
D5G7A7_TUBMM	D5GA87_TUBMM	D5G7A7	D5GA87	RING-type domain-containing protein.	Uncharacterized protein.	0.531
D5G7A7_TUBMM	D5GCN7_TUBMM	D5G7A7	D5GCN7	RING-type domain-containing protein.	RING-type domain-containing protein.	0.447
D5G7A7_TUBMM	D5GD34_TUBMM	D5G7A7	D5GD34	RING-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.888
D5G7A7_TUBMM	D5GDN0_TUBMM	D5G7A7	D5GDN0	RING-type domain-containing protein.	SP-RING-type domain-containing protein.	0.531
D5G7A7_TUBMM	D5GIN2_TUBMM	D5G7A7	D5GIN2	RING-type domain-containing protein.	RING-type domain-containing protein.	0.726
D5G7G8_TUBMM	D5GA87_TUBMM	D5G7G8	D5GA87	Uncharacterized protein.	Uncharacterized protein.	0.651
D5G7G8_TUBMM	D5GDN0_TUBMM	D5G7G8	D5GDN0	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.651
D5G7G8_TUBMM	D5GP65_TUBMM	D5G7G8	D5GP65	Uncharacterized protein.	Uncharacterized protein.	0.788
D5G7W3_TUBMM	D5GIN2_TUBMM	D5G7W3	D5GIN2	HTH TFE/IIEalpha-type domain-containing protein.	RING-type domain-containing protein.	0.998
D5G7W3_TUBMM	D5GK82_TUBMM	D5G7W3	D5GK82	HTH TFE/IIEalpha-type domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.998
D5G810_TUBMM	D5GKZ9_TUBMM	D5G810	D5GKZ9	Chromatin modification-related protein.	Uncharacterized protein.	0.440