(68 nodes) Zinc finger C2H2-type network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GNV3_TUBMM	Uncharacterized protein. (602 aa)
	D5GQ27_TUBMM	Uncharacterized protein. (413 aa)
	D5G408_TUBMM	Uncharacterized protein. (325 aa)
	D5G490_TUBMM	C2H2-type domain-containing protein. (580 aa)
	D5G4F6_TUBMM	C2H2-type domain-containing protein. (520 aa)
	D5G4V3_TUBMM	Uncharacterized protein. (417 aa)
	D5G568_TUBMM	Uncharacterized protein. (732 aa)
	D5G5C9_TUBMM	Matrin-type domain-containing protein. (501 aa)
	D5G6B6_TUBMM	C2H2-type domain-containing protein. (415 aa)
	D5G6F1_TUBMM	C2H2-type domain-containing protein. (166 aa)
	D5G6L8_TUBMM	Uncharacterized protein. (323 aa)
	D5G764_TUBMM	Uncharacterized protein. (1062 aa)
	D5G7F1_TUBMM	Matrin-type domain-containing protein. (285 aa)
	D5G7I7_TUBMM	Uncharacterized protein. (422 aa)
	D5G7J4_TUBMM	C2H2-type domain-containing protein. (328 aa)
	D5G7S3_TUBMM	Uncharacterized protein. (265 aa)
	D5G8D1_TUBMM	Uncharacterized protein. (499 aa)
	D5G993_TUBMM	Uncharacterized protein. (700 aa)
	D5G9D5_TUBMM	Uncharacterized protein. (684 aa)
	D5GA21_TUBMM	Uncharacterized protein. (611 aa)
	D5GA55_TUBMM	Uncharacterized protein. (673 aa)
	D5GAK5_TUBMM	Uncharacterized protein. (468 aa)
	D5GAN0_TUBMM	Uncharacterized protein. (289 aa)
	D5GAQ1_TUBMM	Uncharacterized protein. (635 aa)
	D5GAQ2_TUBMM	C2H2-type domain-containing protein. (1397 aa)
	D5GBK7_TUBMM	Uncharacterized protein. (595 aa)
	D5GCB3_TUBMM	Uncharacterized protein. (549 aa)
	D5GDA0_TUBMM	C2H2-type domain-containing protein. (782 aa)
	RU1C_TUBMM	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (220 aa)
	D5GDN1_TUBMM	Uncharacterized protein. (569 aa)
	D5GDU6_TUBMM	C2H2-type domain-containing protein. (122 aa)
	D5GE66_TUBMM	C2H2-type domain-containing protein. (247 aa)
	D5GED3_TUBMM	C2H2-type domain-containing protein. (619 aa)
	D5GEE9_TUBMM	Uncharacterized protein. (666 aa)
	D5GEN5_TUBMM	Uncharacterized protein. (856 aa)
	D5GEN8_TUBMM	Uncharacterized protein. (816 aa)
	D5GF15_TUBMM	Uncharacterized protein. (652 aa)
	D5GFX1_TUBMM	Uncharacterized protein. (468 aa)
	D5GGI9_TUBMM	RING-type domain-containing protein. (802 aa)
	D5GGQ1_TUBMM	Uncharacterized protein. (493 aa)
	D5GGV0_TUBMM	Uncharacterized protein. (511 aa)
	D5GHF4_TUBMM	Uncharacterized protein. (593 aa)
	D5GHG1_TUBMM	C2H2-type domain-containing protein. (224 aa)
	D5GHR7_TUBMM	Matrin-type domain-containing protein. (239 aa)
	D5GI54_TUBMM	C2H2-type domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (527 aa)
	D5GIJ0_TUBMM	Uncharacterized protein. (501 aa)
	D5GIZ4_TUBMM	Uncharacterized protein. (378 aa)
	D5GJN5_TUBMM	C2H2-type domain-containing protein. (278 aa)
	D5GKK6_TUBMM	Uncharacterized protein. (604 aa)
	D5GKL5_TUBMM	Kin17_mid domain-containing protein. (314 aa)
	D5GKN1_TUBMM	C2H2-type domain-containing protein. (205 aa)
	D5GKN2_TUBMM	Uncharacterized protein. (551 aa)
	D5GL06_TUBMM	Uncharacterized protein. (495 aa)
	D5GL42_TUBMM	Uncharacterized protein. (320 aa)
	D5GLG0_TUBMM	Uncharacterized protein. (862 aa)
	D5GLR4_TUBMM	Uncharacterized protein. (312 aa)
	D5GM71_TUBMM	C2H2-type domain-containing protein. (897 aa)
	D5GM74_TUBMM	Uncharacterized protein. (491 aa)
	D5GM75_TUBMM	Uncharacterized protein. (1059 aa)
	D5GM78_TUBMM	Uncharacterized protein. (465 aa)
	D5GM79_TUBMM	C2H2-type domain-containing protein. (724 aa)
	D5GM80_TUBMM	C2H2-type domain-containing protein. (820 aa)
	D5GMH4_TUBMM	Uncharacterized protein. (317 aa)
	D5GMM4_TUBMM	Uncharacterized protein. (1138 aa)
	D5GNA9_TUBMM	Uncharacterized protein. (545 aa)
	D5GNN6_TUBMM	C2H2-type domain-containing protein. (823 aa)
	D5GNP8_TUBMM	Uncharacterized protein. (277 aa)
	D5GNQ4_TUBMM	Uncharacterized protein. (312 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4V3_TUBMM	D5GDN1_TUBMM	D5G4V3	D5GDN1	Uncharacterized protein.	Uncharacterized protein.	0.720
D5G4V3_TUBMM	D5GDU6_TUBMM	D5G4V3	D5GDU6	Uncharacterized protein.	C2H2-type domain-containing protein.	0.771
D5G5C9_TUBMM	D5G7F1_TUBMM	D5G5C9	D5G7F1	Matrin-type domain-containing protein.	Matrin-type domain-containing protein.	0.738
D5G5C9_TUBMM	D5GE66_TUBMM	D5G5C9	D5GE66	Matrin-type domain-containing protein.	C2H2-type domain-containing protein.	0.902
D5G5C9_TUBMM	D5GHR7_TUBMM	D5G5C9	D5GHR7	Matrin-type domain-containing protein.	Matrin-type domain-containing protein.	0.999
D5G5C9_TUBMM	D5GKL5_TUBMM	D5G5C9	D5GKL5	Matrin-type domain-containing protein.	Kin17_mid domain-containing protein.	0.791
D5G5C9_TUBMM	RU1C_TUBMM	D5G5C9	D5GDH4	Matrin-type domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.942
D5G7F1_TUBMM	D5G5C9_TUBMM	D5G7F1	D5G5C9	Matrin-type domain-containing protein.	Matrin-type domain-containing protein.	0.738
D5G7F1_TUBMM	D5GE66_TUBMM	D5G7F1	D5GE66	Matrin-type domain-containing protein.	C2H2-type domain-containing protein.	0.854
D5G7F1_TUBMM	D5GHR7_TUBMM	D5G7F1	D5GHR7	Matrin-type domain-containing protein.	Matrin-type domain-containing protein.	0.546
D5G7I7_TUBMM	D5GBK7_TUBMM	D5G7I7	D5GBK7	Uncharacterized protein.	Uncharacterized protein.	0.676
D5G8D1_TUBMM	D5GE66_TUBMM	D5G8D1	D5GE66	Uncharacterized protein.	C2H2-type domain-containing protein.	0.436
D5G8D1_TUBMM	D5GHR7_TUBMM	D5G8D1	D5GHR7	Uncharacterized protein.	Matrin-type domain-containing protein.	0.483
D5G993_TUBMM	D5GBK7_TUBMM	D5G993	D5GBK7	Uncharacterized protein.	Uncharacterized protein.	0.498
D5G9D5_TUBMM	D5GBK7_TUBMM	D5G9D5	D5GBK7	Uncharacterized protein.	Uncharacterized protein.	0.426
D5GBK7_TUBMM	D5G7I7_TUBMM	D5GBK7	D5G7I7	Uncharacterized protein.	Uncharacterized protein.	0.676
D5GBK7_TUBMM	D5G993_TUBMM	D5GBK7	D5G993	Uncharacterized protein.	Uncharacterized protein.	0.498
D5GBK7_TUBMM	D5G9D5_TUBMM	D5GBK7	D5G9D5	Uncharacterized protein.	Uncharacterized protein.	0.426
D5GBK7_TUBMM	D5GLR4_TUBMM	D5GBK7	D5GLR4	Uncharacterized protein.	Uncharacterized protein.	0.498
D5GBK7_TUBMM	D5GNP8_TUBMM	D5GBK7	D5GNP8	Uncharacterized protein.	Uncharacterized protein.	0.620